Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40065
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   4.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
 Frame = +1

Query: 142 P*SSMFLLTTARGTRSPLVCTRTDTPGSPSTELTRARRHRYLQRHER*LQHIHR-WNTKL 318
           P SS  L  T   T +    T      + +T  T   +   LQRH     H H   +T +
Sbjct: 97  PASSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHHHHLQSTAV 156

Query: 319 VEHPR 333
            +H R
Sbjct: 157 QDHHR 161



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -2

Query: 259 GGGALLSTPSTESQACPSSCRR---AATW--CLSPSLIGTSTT 146
           GG  +L+TP  +S      CR    AAT    ++P LIG+  T
Sbjct: 372 GGPTILTTPGLDSDGIRLPCREVEAAATARNVVAPFLIGSRRT 414


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 430 RVSTSHSGVSQIQASVAVRC 371
           +V T+HSG S  + ++ + C
Sbjct: 453 KVETTHSGTSLFRINLGIEC 472


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,537
Number of Sequences: 438
Number of extensions: 4726
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)