Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40065
         (866 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33690.1 68417.m04785 expressed protein                             29   4.0  
At3g25160.1 68416.m03141 ER lumen protein retaining receptor fam...    29   5.3  
At3g23120.1 68416.m02914 leucine-rich repeat family protein cont...    29   5.3  
At5g66380.1 68418.m08370 mitochondrial substrate carrier family ...    28   9.3  

>At4g33690.1 68417.m04785 expressed protein 
          Length = 281

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 184 RSPLVCTRTDTPGSPSTELTRARRHRYLQRHER*LQHIHRWNTK 315
           RSPL+  RTD+  S   E+ + R HR  + H++ L   H+   K
Sbjct: 227 RSPLLRRRTDSSSSDEEEVYK-RAHRKRKEHKKKLSKKHKSKEK 269


>At3g25160.1 68416.m03141 ER lumen protein retaining receptor family
           protein similar to SP|P24390 ER lumen protein retaining
           receptor 1 (KDEL receptor 1) {Homo sapiens}; contains
           Pfam profile PF00810: ER lumen protein retaining
           receptor
          Length = 272

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = -3

Query: 537 LKYTMHSSFIKRRDFLLNYFVVFVSMNSNQESLHSCVFRPATAVSRKFKHLWLSVVSTFS 358
           ++Y + +S+IK  D   NY+V+  S      ++ + +  P+T+ S   + LW   V T S
Sbjct: 123 IRYKLKASYIKSLDTCYNYYVLVPS------AILALIINPSTSYSYFHRILWAFCVYTES 176

Query: 357 M 355
           +
Sbjct: 177 V 177


>At3g23120.1 68416.m02914 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-5b GB:AAC78595
           [Lycopersicon esculentum] (Plant Cell 10, 1915-1926
           (1998);
          Length = 784

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
 Frame = +2

Query: 275 MNADSNIYIGGIPSWLNIHGYPGFIGCIENVETTDSHRC---------LNLRDTAVAGRN 427
           +N  SN   G IP W+    +  F+   +N  T    +C         LNLR+ +++G  
Sbjct: 380 LNLGSNSLQGPIPQWICNFRFVFFLDLSDNRFTGSIPQCLKNSTDFNTLNLRNNSLSGFL 439

Query: 428 TQLCRDS 448
            +LC DS
Sbjct: 440 PELCMDS 446


>At5g66380.1 68418.m08370 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 308

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 396 ICETPLWLVETRSYAETP 449
           +C  P+WLV+TR   +TP
Sbjct: 122 LCTNPIWLVKTRLQLQTP 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,258,175
Number of Sequences: 28952
Number of extensions: 331596
Number of successful extensions: 767
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)