Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40064
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0383 - 3405986-3407359,3409283-3410827                           27   7.5  
04_03_0261 + 13586474-13587833,13591621-13591707,13591932-13591960     27   7.5  
01_06_0665 - 31003333-31003680,31003773-31003854,31004068-310041...    27   7.5  
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    27   10.0 
05_01_0091 + 602481-602721,602819-602901,603431-603560,604188-60...    27   10.0 
01_01_1008 - 7987936-7988628,7988923-7989102                           27   10.0 

>08_01_0383 - 3405986-3407359,3409283-3410827
          Length = 972

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 301 DRVGRCAFPLNHRRPKTRAISYSIE 227
           DR+G  + P  HRR     I Y IE
Sbjct: 409 DRIGSASLPFPHRRGNIHGIQYLIE 433


>04_03_0261 + 13586474-13587833,13591621-13591707,13591932-13591960
          Length = 491

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 286 CAFPLNHRRPKTRAISYSIE 227
           C F LNHRRP  +A+  ++E
Sbjct: 469 CQFGLNHRRPWVKAVREALE 488


>01_06_0665 -
           31003333-31003680,31003773-31003854,31004068-31004198,
           31004272-31004370,31004511-31004666,31004877-31004951,
           31005554-31005736,31005833-31005983,31006732-31007027
          Length = 506

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 329 VPRFMYCNGMDFFSLNPAEG-YEATVKTV-LGQV 424
           +PR  Y N +DF SLNP E  YE  +  + LG++
Sbjct: 301 LPRSDYDNALDFESLNPGEQIYEKMISGMYLGEI 334


>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 264 RWFNGNAHRPTRSGRVYSHLYMFPGSCTVTVWI 362
           RW     HR  + G V  HLY++  + T T WI
Sbjct: 279 RWCLNRIHR--QKGHVEDHLYIYGIASTYTRWI 309


>05_01_0091 +
           602481-602721,602819-602901,603431-603560,604188-604267,
           604353-604442,605019-605143,605702-605762,605839-605889,
           605976-606053,606136-606241,606333-606478,607054-607176
          Length = 437

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -2

Query: 481 SKHMSYYNGVHK*YFYRTFNLTKHSLN-GSFVSLCWVQRKEIHTVTVHEPGNMYKCE*TL 305
           S  +    G  K   + T +  KH  + G F+  C++  + ++++T H P ++     T+
Sbjct: 341 SNQLEILQGFRK-KLHDTISELKHKKDWGFFIDSCFIHCQSLNSLTWHSPSSLRVNNKTI 399

Query: 304 PDRVG 290
            + VG
Sbjct: 400 AEAVG 404


>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 378 GFREKKSIPLQYMNLGTCTSVSKLSRIESD 289
           GF  KK + +QY+ L  CT + +  RI+ +
Sbjct: 41  GFEVKKRV-MQYLGLSQCTELRRTDRIQQN 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,659,508
Number of Sequences: 37544
Number of extensions: 233007
Number of successful extensions: 494
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)