Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40064
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_39670| Best HMM Match : DUF753 (HMM E-Value=3.4)                    28   4.4  

>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
 Frame = -3

Query: 525 YHKEYKNKYRVSAKLRNTCHIIMAYINNTSIELLT*PSTVLTVASYPSAGFREKKSIPLQ 346
           Y  E+K +  V  KL      I   +N+  +++      ++ + +  +AG R  + + L 
Sbjct: 452 YQPEFKQRVDVQMKLSE----IAKMLNDRLMKVKDIHEKIMYIKAIGNAGLRACQHVILA 507

Query: 345 YMNLGTCT-----SVSKLSRIESDGARSH*TIAVLRHARSAT 235
           Y+N   CT     SV  L R+ ++   +  T+ VL+H  + T
Sbjct: 508 YLNFDKCTELRVESVWALRRLINE-KNTKVTMTVLKHFINVT 548


>SB_39670| Best HMM Match : DUF753 (HMM E-Value=3.4)
          Length = 332

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -3

Query: 492 SAKLRNTCHIIMAYINNTSIELLT*PSTVLTVASYPSAGFREKKSIPLQYMNLG-TCTSV 316
           S K++ T  I  A +NN   ELL  P+    V SY     +EK    L Y N   TC   
Sbjct: 2   SYKIKKTISIDKAALNNYIDELLASPNIADCVTSYDDLVIQEKGK--LDYTNCNYTCQKC 59

Query: 315 S 313
           S
Sbjct: 60  S 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,494,281
Number of Sequences: 59808
Number of extensions: 288471
Number of successful extensions: 477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)