Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40064
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    29   2.9  
Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z73896-4|CAA98057.2|  503|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -3

Query: 525  YHKEYKNKYRVSAKLRNTCHIIMAYINNTSIELLT*PSTVLTVASY 388
            Y    + K +  +K+R+ CH+++  I  T++     PS +    +Y
Sbjct: 2636 YQFSLQIKSQSDSKIRSACHVVVTVIPPTNLTTWNIPSVIFATRNY 2681


>Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical
           protein T28A8.2 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +2

Query: 245 RACLRTAMVQWERAPS--DSIRESLLTLVHVPRFMYCNGMDFFSLNPAEGYEATVKTVLG 418
           R+ LR  +   E+ P+   S  ++ +T VH+ R       DFF +    G E +++ V+G
Sbjct: 162 RSELRGFLETSEKFPTLPKSDNKNYVTCVHIRR------SDFFDVGFHVGSEKSIREVIG 215

Query: 419 QVKSSIEVL 445
            +K+++ +L
Sbjct: 216 YIKTNVTLL 224


>Z73896-4|CAA98057.2|  503|Caenorhabditis elegans Hypothetical
           protein F09E8.6 protein.
          Length = 503

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = -3

Query: 441 TSIELLT*PSTVLTVASYPSAGFREKKSIPLQYMNLGTCTSVSKLSRI 298
           TS    T P T  T  S P     +K      +  +G C S SK  +I
Sbjct: 447 TSTATSTTPKTTTTTTSAPKEKCEDKNLFCSYWAKIGECNSESKFMKI 494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,607,295
Number of Sequences: 27780
Number of extensions: 223748
Number of successful extensions: 435
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)