Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40064
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36980.1 68418.m04434 hypothetical protein predicted protein,...    31   0.68 
At1g18550.1 68414.m02314 kinesin motor protein-related contains ...    28   3.6  
At3g26920.1 68416.m03368 F-box family protein contains F-box dom...    27   6.3  
At1g36580.1 68414.m04546 2,4-dienoyl-CoA reductase-related low s...    27   6.3  
At3g52990.1 68416.m05841 pyruvate kinase, putative similar to py...    27   8.3  

>At5g36980.1 68418.m04434 hypothetical protein predicted protein,
           Arabidopsi thaliana
          Length = 153

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 222 MISIE*LIARVLGRRWFNGNAHRPTRSGRVYSHLYM 329
           +IS+E L+A + G+ WFN    R    G++ S L+M
Sbjct: 103 LISVEDLLAPLEGKPWFNDLCKRINGCGKILSLLFM 138


>At1g18550.1 68414.m02314 kinesin motor protein-related contains
           similarity to kinesin-related protein GI:4493964 from
           [Plasmodium falciparum]
          Length = 799

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -3

Query: 462 IMAYINNTSIELLT*PSTVLTVASYPSAGFREKKSIPLQYMNLGTCTSVSKLSRIESDGA 283
           I A  NN +I L   P ++ ++ + PSA   ++K  P   +  GTC +   L R +++ A
Sbjct: 536 IAAANNNNNISLT--PPSISSLMTPPSALTAQQKKKPRHSLLSGTCFTPESLKRTKAEEA 593


>At3g26920.1 68416.m03368 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 565

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 480 EALLKLYIYFCILYDITINICLK 548
           E L  L +Y CIL D+   +CLK
Sbjct: 47  ETLETLELYHCILIDVPFPVCLK 69


>At1g36580.1 68414.m04546 2,4-dienoyl-CoA reductase-related low
           similarity to peroxisomal 2,4-dienoyl-CoA reductase
           [Homo sapiens] GI:9967554
          Length = 237

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 197 IIVSVEKYDDFYRVADRACLRTAMVQWERAPSDSIR 304
           I+  +EK     R+A  AC+ T  + W ++PS+  R
Sbjct: 176 ILAYIEKKKKKKRMATSACVPTMSITWVKSPSNPRR 211


>At3g52990.1 68416.m05841 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Glycine max]
           SWISS-PROT:Q42806
          Length = 527

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 270 FNGNAHRPTRSGRVYSHLYMFPGSCTVTVWI 362
           FNG A    +   ++   Y+F GS T +VW+
Sbjct: 135 FNGLAKAVKKGDTIFVGQYLFTGSETTSVWL 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,588,229
Number of Sequences: 28952
Number of extensions: 199662
Number of successful extensions: 381
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)