Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40063
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 131 8e-32
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 131 8e-32
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 29 0.50
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 2.0
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 6.2
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 25 6.2
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 6.2
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 25 6.2
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 6.2
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 6.2
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 25 8.2
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 8.2
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 8.2
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 131 bits (316), Expect = 8e-32
Identities = 60/85 (70%), Positives = 71/85 (83%)
Frame = +1
Query: 1 KRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVY 180
KRK+ELGR +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE ++KTRII V Y
Sbjct: 24 KRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAY 83
Query: 181 NASNNELVRTKTLVKNAIVVVDATP 255
+ SNNELVRT TL K+AIV +DA P
Sbjct: 84 HPSNNELVRTNTLTKSAIVQIDAAP 108
Score = 79.4 bits (187), Expect = 4e-16
Identities = 43/85 (50%), Positives = 53/85 (62%)
Frame = +3
Query: 255 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 434
FR WYE+HY + +G KG K T +S+ RK+ AR +KV+ ALE QF
Sbjct: 109 FRVWYETHYGILMG-SKGKKATSTPNP-----KSKHVQRKHSARLGDSKVDSALETQFAA 162
Query: 435 GRLLACVASRPGQCGRADGYILEGK 509
GRL A V+SRPGQ GR DGYILEG+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGE 187
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 131 bits (316), Expect = 8e-32
Identities = 60/85 (70%), Positives = 71/85 (83%)
Frame = +1
Query: 1 KRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVY 180
KRK+ELGR +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE ++KTRII V Y
Sbjct: 24 KRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAY 83
Query: 181 NASNNELVRTKTLVKNAIVVVDATP 255
+ SNNELVRT TL K+AIV +DA P
Sbjct: 84 HPSNNELVRTNTLTKSAIVQIDAAP 108
Score = 78.6 bits (185), Expect = 6e-16
Identities = 43/85 (50%), Positives = 53/85 (62%)
Frame = +3
Query: 255 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 434
FR WYE+HY + +G KG K T +S+ RK+ AR +KV+ ALE QF
Sbjct: 109 FRVWYETHYGILMG-SKGKKATATPTP-----KSKHVQRKHSARLGDSKVDSALETQFAA 162
Query: 435 GRLLACVASRPGQCGRADGYILEGK 509
GRL A V+SRPGQ GR DGYILEG+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGE 187
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 29.1 bits (62), Expect = 0.50
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 519 NSSSCLLRCNHRRDHTDLGDSPRKPANAPCGIALLE 412
N CLLR H+RD + + RK N G LLE
Sbjct: 436 NIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 13 ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 165
EL +N + Q+ + S T YRA+ LDTG+ E + K RI
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 191 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 105
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 476 WSRRWLHLRRQELEFYLRKIKSKRAQ*YLYLK*TLKI 586
W+++WL L L Y + KS+ AQ L LK K+
Sbjct: 42 WTKKWLVLSSNSLSIY-KGSKSESAQVTLLLKDIQKV 77
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 231 NCCSRCNSFRQWYESHYTLPLGRKKGA---KLTEAEEAIINKKRS 356
+C C +Q +++Y +PL K+G ++T + + ++ KR+
Sbjct: 1119 SCVIDCKLLQQQQQTNYEIPLDSKQGVLYLRITLSPKWVLRSKRA 1163
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 6.2
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +3
Query: 339 INKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 509
++ K +K A + L RQ+ K A EE+ RLL G+ GR ++ GK
Sbjct: 188 LHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLL------QGKGGRQKKKVVNGK 238
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 219 CQECNCCSRCNSFRQWYESHYTLPLGRKK 305
C C N+F ++ HY LP RK+
Sbjct: 105 CSNCRAFINSNAFGKFKGQHYCLPCLRKQ 133
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 1 KRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 108
KRK L R A RL + + S+ S+GG +A +
Sbjct: 49 KRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 249 NSFRQWYESHYTLPLGRKK 305
N ++W E+H T PL RK+
Sbjct: 134 NCLQKWLENHCTCPLCRKE 152
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 243 RCNSFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQ 359
R NS+ W S++ G + T+ EE + +K+R++
Sbjct: 191 RRNSYSSWSGSNFESSNGSNRRRYRTQMEEPLSSKRRNR 229
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 38 PGSVLSVSTPFVHVVEILSTVRCVWTPVTSLG 133
P VLS P++ + L + C+W P LG
Sbjct: 682 PILVLSTMKPYLCNITFLGSHLCIWQPKILLG 713
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,967
Number of Sequences: 5004
Number of extensions: 42422
Number of successful extensions: 138
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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