Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40063
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 132 3e-31
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 131 3e-31
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.22
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 32 0.39
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 30 1.2
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629... 30 1.6
01_02_0013 + 10162478-10163581 29 2.1
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 3.6
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 29 3.6
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 6.3
03_06_0335 + 33211705-33211800,33211886-33211982,33212078-332122... 27 8.4
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 132 bits (318), Expect = 3e-31
Identities = 64/86 (74%), Positives = 72/86 (83%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 KRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVV 177
KRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TRKTRI+DVV
Sbjct: 24 KRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVV 83
Query: 178 YNASNNELVRTKTLVKNAIVVVDATP 255
YNASNNELVRT+TLVK+AIV VDA P
Sbjct: 84 YNASNNELVRTQTLVKSAIVQVDAAP 109
Score = 79.0 bits (186), Expect = 3e-15
Identities = 47/110 (42%), Positives = 60/110 (54%), Gaps = 25/110 (22%)
Frame = +3
Query: 255 FRQWYESHYTLPLGRKKGA-------------------------KLTEAEEAIINKKRSQ 359
F+QWY +HY + +GRKK A K +AE K+S
Sbjct: 110 FKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLKGQDAEATTEEAKKSN 169
Query: 360 KTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 509
RK RQ+ ++ +EEQF +GRLLAC++SRPGQCGRADGYILEGK
Sbjct: 170 HVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGK 219
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 131 bits (317), Expect = 3e-31
Identities = 64/86 (74%), Positives = 72/86 (83%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 KRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVV 177
KRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TRKTRI+DVV
Sbjct: 24 KRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVV 83
Query: 178 YNASNNELVRTKTLVKNAIVVVDATP 255
YNASNNELVRT+TLVK+AIV VDA P
Sbjct: 84 YNASNNELVRTQTLVKSAIVQVDAAP 109
Score = 94.3 bits (224), Expect = 6e-20
Identities = 47/93 (50%), Positives = 59/93 (63%), Gaps = 8/93 (8%)
Frame = +3
Query: 255 FRQWYESHYTLPLGRKKGAKLT--------EAEEAIINKKRSQKTARKYLARQRLAKVEG 410
F+QWY +HY + +GRKK A E E A K+S RK RQ+ ++
Sbjct: 110 FKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDS 169
Query: 411 ALEEQFHTGRLLACVASRPGQCGRADGYILEGK 509
+EEQF +GRLLAC++SRPGQCGRADGYILEGK
Sbjct: 170 HIEEQFGSGRLLACISSRPGQCGRADGYILEGK 202
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +1
Query: 4 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 138
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 58 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 237
+H + + GG T R +R + C +++ ++V++ + NELV T +N I+
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 435
Query: 238 V 240
V
Sbjct: 436 V 436
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -1
Query: 266 PLPEGVASTTTIAFLTRVFVRTNSLL-DALYTTSMIRVL 153
P+P+GVAS + + L + + +SL+ ALY S +RV+
Sbjct: 220 PIPDGVASLSQLEILDMQYNQLSSLVPQALYNMSWLRVM 258
>06_02_0131 +
12161268-12161781,12162123-12162867,12162950-12162986,
12163083-12163216,12163298-12163625
Length = 585
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = -1
Query: 284 RIMRLIPLPEGVASTTTIAFLTRVFVRTNS---LLDALYTTSMIRVLRVEHSDPQEKLPV 114
R M + + G+ ST ++ FL + T + +L+ +YT ++ EH DP + +
Sbjct: 383 RNMDFLEVKSGLQSTQSLPFLEEHDMSTEAFEKVLEYMYTDNL------EHMDPNQAEEL 436
Query: 113 SRRSARYLVFP 81
++RYL+FP
Sbjct: 437 FDIASRYLLFP 447
>01_02_0013 + 10162478-10163581
Length = 367
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 83 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPL 220
E +S RC P+ G R + A SL + ++HL +C RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 41 GSVLSVSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 199
G + P + VV + + C+W + SLG R Q++K + L ++ + +N
Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3
Query: 513 SSCLLRCNHRRDHTDLGDSPRKPANAPCGIA 421
SSC+ +C HR D D D ANA G A
Sbjct: 67 SSCMSKCCHRHDDDD-DDKANAKANATAGAA 96
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 303 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 434
KG+KL + E + + R++ A R LA GAL + H+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47
>03_06_0335 +
33211705-33211800,33211886-33211982,33212078-33212204,
33212953-33213138,33213702-33213789,33214028-33214084,
33214171-33214260,33214339-33214461,33215024-33215098,
33215169-33215228,33215464-33215580,33215854-33216093,
33216181-33216246,33216370-33216459,33216914-33217003,
33217309-33217398,33217702-33217770,33217841-33217921,
33218108-33218215,33218336-33218439,33218822-33218935,
33219018-33219231
Length = 793
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 263 LPEGVASTTTIAFLTRVFVRTNSLLDAL-YTTSMIRVLRVEHSDPQE 126
L EG+A AF + +N+L DAL Y+ M+ LR P +
Sbjct: 14 LAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHK 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,272,776
Number of Sequences: 37544
Number of extensions: 301962
Number of successful extensions: 987
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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