Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40063
(587 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 161 1e-39
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 161 1e-39
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 161 1e-39
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 161 1e-39
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 139 8e-33
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 96 7e-20
BC017312-1|AAH17312.1| 442|Homo sapiens matrix-remodelling asso... 31 3.0
BC006213-1|AAH06213.1| 442|Homo sapiens matrix-remodelling asso... 31 3.0
AL139287-18|CAI23189.1| 442|Homo sapiens matrix-remodelling ass... 31 3.0
AL139287-17|CAI23188.1| 450|Homo sapiens matrix-remodelling ass... 31 3.0
AK027269-1|BAB55010.1| 450|Homo sapiens protein ( Homo sapiens ... 31 3.0
AB052096-1|BAD05132.1| 442|Homo sapiens limitrin protein. 31 3.0
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 31 4.0
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 31 4.0
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 31 4.0
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 31 4.0
BC037399-1|AAH37399.1| 446|Homo sapiens KIAA0415 protein protein. 29 9.2
BC008841-1|AAH08841.2| 391|Homo sapiens KIAA0415 protein protein. 29 9.2
AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptas... 29 9.2
AB007875-1|BAA24845.1| 634|Homo sapiens KIAA0415 protein. 29 9.2
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 161 bits (392), Expect = 1e-39
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +1
Query: 1 KRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVY 180
KRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVY
Sbjct: 24 KRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVY 83
Query: 181 NASNNELVRTKTLVKNAIVVVDATP 255
NASNNELVRTKTLVKN IV++D+TP
Sbjct: 84 NASNNELVRTKTLVKNCIVLIDSTP 108
Score = 139 bits (336), Expect = 8e-33
Identities = 64/95 (67%), Positives = 75/95 (78%), Gaps = 2/95 (2%)
Frame = +3
Query: 231 NCCSRCNS--FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKV 404
NC +S +RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+
Sbjct: 99 NCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKI 158
Query: 405 EGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 509
LEEQF G+LLAC+ASRPGQCGRADGY+LEGK
Sbjct: 159 SSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGK 193
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 161 bits (392), Expect = 1e-39
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +1
Query: 1 KRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVY 180
KRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVY
Sbjct: 24 KRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVY 83
Query: 181 NASNNELVRTKTLVKNAIVVVDATP 255
NASNNELVRTKTLVKN IV++D+TP
Sbjct: 84 NASNNELVRTKTLVKNCIVLIDSTP 108
Score = 139 bits (336), Expect = 8e-33
Identities = 64/95 (67%), Positives = 75/95 (78%), Gaps = 2/95 (2%)
Frame = +3
Query: 231 NCCSRCNS--FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKV 404
NC +S +RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+
Sbjct: 99 NCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKI 158
Query: 405 EGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 509
LEEQF G+LLAC+ASRPGQCGRADGY+LEGK
Sbjct: 159 SSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGK 193
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 161 bits (392), Expect = 1e-39
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +1
Query: 1 KRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVY 180
KRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVY
Sbjct: 24 KRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVY 83
Query: 181 NASNNELVRTKTLVKNAIVVVDATP 255
NASNNELVRTKTLVKN IV++D+TP
Sbjct: 84 NASNNELVRTKTLVKNCIVLIDSTP 108
Score = 139 bits (336), Expect = 8e-33
Identities = 64/95 (67%), Positives = 75/95 (78%), Gaps = 2/95 (2%)
Frame = +3
Query: 231 NCCSRCNS--FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKV 404
NC +S +RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+
Sbjct: 99 NCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKI 158
Query: 405 EGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 509
LEEQF G+LLAC+ASRPGQCGRADGY+LEGK
Sbjct: 159 SSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGK 193
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 161 bits (392), Expect = 1e-39
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +1
Query: 1 KRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVY 180
KRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVY
Sbjct: 24 KRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVY 83
Query: 181 NASNNELVRTKTLVKNAIVVVDATP 255
NASNNELVRTKTLVKN IV++D+TP
Sbjct: 84 NASNNELVRTKTLVKNCIVLIDSTP 108
Score = 139 bits (336), Expect = 8e-33
Identities = 64/95 (67%), Positives = 75/95 (78%), Gaps = 2/95 (2%)
Frame = +3
Query: 231 NCCSRCNS--FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKV 404
NC +S +RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+
Sbjct: 99 NCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKI 158
Query: 405 EGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 509
LEEQF G+LLAC+ASRPGQCGRADGY+LEGK
Sbjct: 159 SSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGK 193
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 139 bits (336), Expect = 8e-33
Identities = 64/95 (67%), Positives = 75/95 (78%), Gaps = 2/95 (2%)
Frame = +3
Query: 231 NCCSRCNS--FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKV 404
NC +S +RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+
Sbjct: 79 NCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKI 138
Query: 405 EGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 509
LEEQF G+LLAC+ASRPGQCGRADGY+LEGK
Sbjct: 139 SSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGK 173
Score = 101 bits (242), Expect = 2e-21
Identities = 56/85 (65%), Positives = 63/85 (74%)
Frame = +1
Query: 1 KRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVY 180
KRKYELGRPAANT++GP+RIH+VR RGG C TRKTRIIDVVY
Sbjct: 24 KRKYELGRPAANTKIGPRRIHTVRVRGG-------------------C-TRKTRIIDVVY 63
Query: 181 NASNNELVRTKTLVKNAIVVVDATP 255
NASNNELVRTKTLVKN IV++D+TP
Sbjct: 64 NASNNELVRTKTLVKNCIVLIDSTP 88
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 96.3 bits (229), Expect = 7e-20
Identities = 43/65 (66%), Positives = 52/65 (80%)
Frame = +3
Query: 315 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGY 494
LT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60
Query: 495 ILEGK 509
+LEGK
Sbjct: 61 VLEGK 65
>BC017312-1|AAH17312.1| 442|Homo sapiens matrix-remodelling
associated 8 protein.
Length = 442
Score = 31.1 bits (67), Expect = 3.0
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 434 GAFAGLRGESPRSVWSRRWLHLRRQELEFYLR 529
GA A LR +SPR VW++ LH R++ L + LR
Sbjct: 47 GARAVLRCQSPRMVWTQDRLHDRQRVLHWDLR 78
>BC006213-1|AAH06213.1| 442|Homo sapiens matrix-remodelling
associated 8 protein.
Length = 442
Score = 31.1 bits (67), Expect = 3.0
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 434 GAFAGLRGESPRSVWSRRWLHLRRQELEFYLR 529
GA A LR +SPR VW++ LH R++ L + LR
Sbjct: 47 GARAVLRCQSPRMVWTQDRLHDRQRVLHWDLR 78
>AL139287-18|CAI23189.1| 442|Homo sapiens matrix-remodelling
associated 8 protein.
Length = 442
Score = 31.1 bits (67), Expect = 3.0
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 434 GAFAGLRGESPRSVWSRRWLHLRRQELEFYLR 529
GA A LR +SPR VW++ LH R++ L + LR
Sbjct: 47 GARAVLRCQSPRMVWTQDRLHDRQRVLHWDLR 78
>AL139287-17|CAI23188.1| 450|Homo sapiens matrix-remodelling
associated 8 protein.
Length = 450
Score = 31.1 bits (67), Expect = 3.0
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 434 GAFAGLRGESPRSVWSRRWLHLRRQELEFYLR 529
GA A LR +SPR VW++ LH R++ L + LR
Sbjct: 47 GARAVLRCQSPRMVWTQDRLHDRQRVLHWDLR 78
>AK027269-1|BAB55010.1| 450|Homo sapiens protein ( Homo sapiens
cDNA FLJ14363 fis, clone HEMBA1000719. ).
Length = 450
Score = 31.1 bits (67), Expect = 3.0
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 434 GAFAGLRGESPRSVWSRRWLHLRRQELEFYLR 529
GA A LR +SPR VW++ LH R++ L + LR
Sbjct: 47 GARAVLRCQSPRMVWTQDRLHDRQRVLHWDLR 78
>AB052096-1|BAD05132.1| 442|Homo sapiens limitrin protein.
Length = 442
Score = 31.1 bits (67), Expect = 3.0
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 434 GAFAGLRGESPRSVWSRRWLHLRRQELEFYLR 529
GA A LR +SPR VW++ LH R++ L + LR
Sbjct: 47 GARAVLRCQSPRMVWTQDRLHDRQRVLHWDLR 78
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.0
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 294 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 440
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.0
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 294 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 440
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.0
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 294 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 440
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 30.7 bits (66), Expect = 4.0
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 294 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 440
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BC037399-1|AAH37399.1| 446|Homo sapiens KIAA0415 protein protein.
Length = 446
Score = 29.5 bits (63), Expect = 9.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 463 RLATQASKRPVWNCSSRAPSTL 398
R A AS+RP+W+ S RAPS L
Sbjct: 329 RSAPAASERPLWDTSLRAPSCL 350
>BC008841-1|AAH08841.2| 391|Homo sapiens KIAA0415 protein protein.
Length = 391
Score = 29.5 bits (63), Expect = 9.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 463 RLATQASKRPVWNCSSRAPSTL 398
R A AS+RP+W+ S RAPS L
Sbjct: 69 RSAPAASERPLWDTSLRAPSCL 90
>AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptase
protein.
Length = 523
Score = 29.5 bits (63), Expect = 9.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 161 RVLRVEHSDPQEKLPVSRRSARYLVFPPRERTE 63
R R E PQ+ + V RS R L PPR RT+
Sbjct: 411 RTARCELRSPQQPVSVPGRSPRALWRPPRRRTQ 443
>AB007875-1|BAA24845.1| 634|Homo sapiens KIAA0415 protein.
Length = 634
Score = 29.5 bits (63), Expect = 9.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 463 RLATQASKRPVWNCSSRAPSTL 398
R A AS+RP+W+ S RAPS L
Sbjct: 506 RSAPAASERPLWDTSLRAPSCL 527
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,202,831
Number of Sequences: 237096
Number of extensions: 1655725
Number of successful extensions: 4357
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4357
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -