Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40063
(587 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 139 1e-33
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 32 0.35
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.46
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.46
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.46
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.46
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.46
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.46
Z29115-3|CAA82361.1| 347|Caenorhabditis elegans Hypothetical pr... 31 0.61
AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 29 3.2
Z83236-10|CAB05780.2| 236|Caenorhabditis elegans Hypothetical p... 28 5.7
Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical pr... 28 5.7
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 28 5.7
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 28 5.7
Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 27 7.5
Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical pr... 27 9.9
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 139 bits (337), Expect = 1e-33
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +1
Query: 1 KRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVY 180
KRK+ELGRPAANT++G R+ VR+RGGN KYRALRLD+GNFSW SE +TRKTRI+D +Y
Sbjct: 24 KRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMY 83
Query: 181 NASNNELVRTKTLVKNAIVVVDATP 255
NA+NNELVRTKTLVK AI+ VDA P
Sbjct: 84 NATNNELVRTKTLVKGAIISVDAAP 108
Score = 120 bits (290), Expect = 6e-28
Identities = 55/85 (64%), Positives = 67/85 (78%)
Frame = +3
Query: 255 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 434
FRQWYE+HY LPL RKK AKL+E + AI+NKKRS T +KY RQ+ A V+ L EQF+T
Sbjct: 109 FRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNT 168
Query: 435 GRLLACVASRPGQCGRADGYILEGK 509
GRLLA ++S PGQ G+A+GYILEGK
Sbjct: 169 GRLLARISSSPGQVGQANGYILEGK 193
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 461 SPRSVWSRRWLHLRRQELEFYLRKIKSKRAQ 553
SP V L +EL+FYLRKI++K+A+
Sbjct: 178 SPGQVGQANGYILEGKELDFYLRKIRAKKAK 208
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 31.9 bits (69), Expect = 0.35
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +3
Query: 240 SRCNSFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALE 419
S C++F QW+ + + G K +LT+ EE ++ +R K R +L R+ +VE L
Sbjct: 546 SSCSTFEQWFNAPFA-TTGEK--VELTQ-EETMLIIRRLHKVLRPFLLRRLKKEVESELP 601
Query: 420 EQ 425
++
Sbjct: 602 DK 603
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 100 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 204
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 100 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 204
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 100 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 204
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 100 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 204
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 100 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 204
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 100 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 204
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>Z29115-3|CAA82361.1| 347|Caenorhabditis elegans Hypothetical
protein T26G10.4 protein.
Length = 347
Score = 31.1 bits (67), Expect = 0.61
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +3
Query: 300 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCG 479
KK A L +A E N+K + K + R +V AL+ +FHT +L+ SR Q
Sbjct: 257 KKLAVLVQATEDS-NEKLFTEDGVKKMQRAMNEQVSRALKHRFHTTKLVKSEISRVVQMH 315
Query: 480 RADG-YILEGKNSSSI*ERSSLRGRSNICILN 572
A ++ G N S R + R N+ N
Sbjct: 316 PASNKFVARGGNLSLACHRFVHKARLNLLACN 347
>AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 9 protein.
Length = 189
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 287 QRIMRLIPLPEGVASTTTIAFLTRVFVRTNSL 192
++I+R +PLPEGV +T + A + V N +
Sbjct: 118 EKIVRRVPLPEGVIATISTAQKDEIVVEGNDV 149
>Z83236-10|CAB05780.2| 236|Caenorhabditis elegans Hypothetical
protein K10H10.4 protein.
Length = 236
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 225 ECNCCSRCNSFRQWYESHYTLPLGRKKG 308
+CNC S C+ + Q +Y P G G
Sbjct: 36 QCNCPSFCSGYMQQQPQYYQSPCGYSSG 63
>Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical
protein F29G6.3a protein.
Length = 772
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 175 VYNASNNELVRTKTLVKNAIVVVDATPSGS-GMSRI 279
+YNA E+ + K +VK+ VV++ SGS G+S +
Sbjct: 448 IYNAYETEIHQQKDIVKSTTVVLEDVRSGSEGVSSL 483
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +3
Query: 297 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 422
+K G A++ I K+++ KTA+KY +++LA++E L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 203 TNSLLDALYTTSMIRVLRV 147
TNSL+DA+YTT+ + L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151
>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 142 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPSGSGMS 273
C+ R + + S+N+LV K VKNAI +D GS S
Sbjct: 1671 CAPRPVLTMPIQRMPSSNDLVMKKLQVKNAISNLDLRSFGSQSS 1714
>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 142 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPSGSGMS 273
C+ R + + S+N+LV K VKNAI +D GS S
Sbjct: 1671 CAPRPVLTMPIQRMPSSNDLVMKKLQVKNAISNLDLRSFGSQSS 1714
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
protein F29G6.3c protein.
Length = 1453
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 175 VYNASNNELVRTKTLVKNAIVVVDATPSGS 264
+YNA E+ + K +VK+ VV++ SGS
Sbjct: 448 IYNAYETEIHQQKDIVKSTTVVLEDVRSGS 477
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
protein F29G6.3b protein.
Length = 1785
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 175 VYNASNNELVRTKTLVKNAIVVVDATPSGS 264
+YNA E+ + K +VK+ VV++ SGS
Sbjct: 448 IYNAYETEIHQQKDIVKSTTVVLEDVRSGS 477
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +3
Query: 198 IGAYKDPCQECNC---CSRCNSFRQWYESHYT 284
IG K+ C++CNC RC+ R YES T
Sbjct: 334 IGDEKNECRQCNCNRHALRCHFDRAVYESSGT 365
>Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical
protein ZC15.5 protein.
Length = 597
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 430 WNCSSRAPSTLARRCLA 380
W C +RAP+T+ RC A
Sbjct: 555 WTCQTRAPTTIILRCPA 571
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,695,385
Number of Sequences: 27780
Number of extensions: 249213
Number of successful extensions: 872
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -