Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40063
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   133   1e-31
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   132   2e-31
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea...    31   0.57 
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    29   3.0  
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    28   5.3  
At5g05240.1 68418.m00560 expressed protein similar to unknown pr...    27   9.3  
At3g08630.1 68416.m01002 expressed protein                             27   9.3  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  133 bits (321), Expect = 1e-31
 Identities = 62/86 (72%), Positives = 73/86 (84%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   KRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVV 177
           KRKYE+GR  ANT+L   + +  +R RGGN K+RALRLDTGN+SWGSE +TRKTR++DVV
Sbjct: 24  KRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVV 83

Query: 178 YNASNNELVRTKTLVKNAIVVVDATP 255
           YNASNNELVRTKTLVK+AIV VDA P
Sbjct: 84  YNASNNELVRTKTLVKSAIVQVDAAP 109



 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 50/95 (52%), Positives = 62/95 (65%), Gaps = 10/95 (10%)
 Frame = +3

Query: 255 FRQWYESHYTLPLGRKK-GAKLT-----EAEEAII----NKKRSQKTARKYLARQRLAKV 404
           F+QWY SHY + LGRKK  A  T     E EEA +      K+S    RK  +RQ    +
Sbjct: 110 FKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSL 169

Query: 405 EGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 509
           +  +E+QF +GRLLAC++SRPGQCGRADGYILEGK
Sbjct: 170 DSHIEDQFASGRLLACISSRPGQCGRADGYILEGK 204


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  132 bits (318), Expect = 2e-31
 Identities = 64/90 (71%), Positives = 72/90 (80%), Gaps = 1/90 (1%)
 Frame = +1

Query: 1   KRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVV 177
           KRKYELGR  ANT+L   + +  +R RGGN K+RALRLDTGNFSWGSE  TRKTRI+DV 
Sbjct: 24  KRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVA 83

Query: 178 YNASNNELVRTKTLVKNAIVVVDATPSGSG 267
           YNASNNELVRT+TLVK+AIV VDA P   G
Sbjct: 84  YNASNNELVRTQTLVKSAIVQVDAAPFKQG 113



 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 46/85 (54%), Positives = 55/85 (64%)
 Frame = +3

Query: 255 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 434
           F+Q Y  HY + +GRKK  +    EE     K+S    RK   RQ    ++  LEEQF +
Sbjct: 110 FKQGYLQHYGVDIGRKKKGEAVTTEEV----KKSNHVQRKLEMRQEGRALDSHLEEQFSS 165

Query: 435 GRLLACVASRPGQCGRADGYILEGK 509
           GRLLAC+ASRPGQCGRADGYILEGK
Sbjct: 166 GRLLACIASRPGQCGRADGYILEGK 190


>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina};
           contains 5 WD-40 repeats (PF00400); similar to  beta
           transducin-like protein HET-E2C*4
           (GP:17225206)[Podospora anserina]
          Length = 530

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 300 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVAS-RPGQC 476
           KKG KLT  ++ ++ K R ++     L  ++ A V   +EE     +L+ CV++   G+ 
Sbjct: 393 KKGLKLTRHDK-LLKKFRHKEALVSVLEEKKPANVVAVMEELVARRKLMKCVSNMEEGEL 451

Query: 477 GRADGYI 497
           G   G++
Sbjct: 452 GMLLGFL 458


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 79  GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 240
           GG T  R +R      +    C    +++ ++V++ + NELV T    +N I+V
Sbjct: 353 GGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIV 406


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 209 VRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPP 78
           +R+ S LD+L     +RVL V H+    +LPV   + RYL   P
Sbjct: 580 IRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSP 621


>At5g05240.1 68418.m00560 expressed protein similar to unknown
           protein (gb AAD32815.2)
          Length = 530

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 273 SHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 422
           SH  +P  +K+G K     +A + KKR  +   +     RLA   G L E
Sbjct: 190 SHGGIPAPKKRGRKTKINNDAAVAKKRKIERKEEVDRFARLAAPSGLLNE 239


>At3g08630.1 68416.m01002 expressed protein
          Length = 339

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 476 TLTWATRHASQQTPRVELLF*STLNLSKTLPCQVFSCCLLTSLLVDN 336
           +LTWAT        R + L  +   L K+LP  VF   ++   +V+N
Sbjct: 256 SLTWATHMGVSANVRYQTLNGAEFLLEKSLPPLVFKTSVIALRVVNN 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,960,191
Number of Sequences: 28952
Number of extensions: 231593
Number of successful extensions: 710
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)