Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40062
         (828 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    25   0.55 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.2  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   6.8  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 277 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIP 402
           + LWD    E   RL   +  +  VIL   ++   + LEN+P
Sbjct: 396 IKLWDMFQNESLTRLYKKAGKEIPVILWTSTLTQKEYLENLP 437


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 204 N*SLLNTISRHVLPHAPSPTIT---NFLRIAAIGPELAEEEHHH 82
           N S  ++ SRH + H P P +T   +  R+AA    +AE    H
Sbjct: 149 NYSAYSSASRHHVDHQPVPYLTPADDRGRVAAAAAMVAETASFH 192


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
 Frame = +2

Query: 227 VFENYVADIEWMEN--KWNWL 283
           VFE  + D +W  N   W WL
Sbjct: 393 VFEELLLDADWSVNAGMWMWL 413


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 613 YTFLAFGRAFQICKRVNLFSHSPAF 539
           +  L F   F+ C R+N  S  P+F
Sbjct: 397 FILLRFLSVFESCTRLNNESRKPSF 421


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,974
Number of Sequences: 336
Number of extensions: 4358
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)