Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40062
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 146 3e-36
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 142 5e-35
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 126 3e-30
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 126 5e-30
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 117 2e-27
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 108 1e-24
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 53 6e-08
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 53 6e-08
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 53 6e-08
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 53 6e-08
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 52 8e-08
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 52 1e-07
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 49 9e-07
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 48 2e-06
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 46 5e-06
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 38 0.002
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 36 0.005
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.46
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.61
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 28 1.4
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 27 2.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 7.5
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 26 7.5
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 9.9
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 9.9
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 9.9
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 9.9
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 146 bits (355), Expect = 3e-36
Identities = 64/89 (71%), Positives = 76/89 (85%)
Frame = +1
Query: 256 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFC 435
VDG+ +ELALWDTAGQEDYDRLRPLSYPD+ V+L+CFSVD+P+SL+N+ EKW EV HFC
Sbjct: 49 VDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFC 108
Query: 436 PNVPIILVGNKKDLRNDPATINELPK*SK 522
N+PI+LVG K DLRNDP TI EL K S+
Sbjct: 109 SNLPILLVGCKVDLRNDPKTIEELSKTSQ 137
Score = 88.6 bits (210), Expect = 9e-19
Identities = 39/44 (88%), Positives = 42/44 (95%)
Frame = +2
Query: 125 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE 256
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+E
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVE 48
Score = 57.2 bits (132), Expect = 3e-09
Identities = 31/57 (54%), Positives = 37/57 (64%), Gaps = 7/57 (12%)
Frame = +2
Query: 539 EGRAMAEKINAFAYLECSAKSKEGVREVFETATRAAL-------QVKKKKKTRCSLL 688
EG+ +A+KI A+ YLECSAK EGV EVFETA RA++ K KKK C LL
Sbjct: 144 EGQVVAQKIGAYKYLECSAKLNEGVNEVFETAARASMLKFKPASVPKTKKKKHCILL 200
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 142 bits (344), Expect = 5e-35
Identities = 63/86 (73%), Positives = 72/86 (83%)
Frame = +1
Query: 256 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFC 435
VDG+ VELALWDTAGQEDYDRLRPLSYPD+ VIL+CF+VDSPDSL+N+ EKW EV HFC
Sbjct: 49 VDGRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFC 108
Query: 436 PNVPIILVGNKKDLRNDPATINELPK 513
++PI+LV K DLRNDP I EL K
Sbjct: 109 SSLPILLVACKADLRNDPKIIEELSK 134
Score = 88.6 bits (210), Expect = 9e-19
Identities = 39/44 (88%), Positives = 42/44 (95%)
Frame = +2
Query: 125 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE 256
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+E
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVE 48
Score = 65.7 bits (153), Expect = 8e-12
Identities = 37/61 (60%), Positives = 45/61 (73%), Gaps = 9/61 (14%)
Frame = +2
Query: 533 TAEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAAL-----QVK----KKKKTRCSL 685
T EG+A+A+KI A+ YLECSAK+ EGVREVFE+ATRAA+ +VK KKK RC L
Sbjct: 142 TEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAMLKHKPKVKPSSGTKKKKRCIL 201
Query: 686 L 688
L
Sbjct: 202 L 202
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 126 bits (305), Expect = 3e-30
Identities = 53/76 (69%), Positives = 64/76 (84%)
Frame = +1
Query: 259 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCP 438
+ K +ELALWDTAGQE+YDRLRPLSYP+++VIL+CFS+D P SL N+ EKW PEV+HFCP
Sbjct: 60 NSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCP 119
Query: 439 NVPIILVGNKKDLRND 486
PI+LVG K DLR D
Sbjct: 120 RTPIVLVGLKADLRKD 135
Score = 81.0 bits (191), Expect = 2e-16
Identities = 37/59 (62%), Positives = 42/59 (71%)
Frame = +2
Query: 92 SSSASSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEWMEN 268
S+ SG + KKLV+VGDG CGKTCLLIVFS FPE YVPTVFENY+ DI + N
Sbjct: 2 SAFKKSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPN 60
Score = 33.5 bits (73), Expect = 0.037
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 539 EGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKK---KKTRCSLL 688
+ +++A +NA Y+ECSAK GV EVF+ A L +KK K C +L
Sbjct: 154 QAQSVALSMNA-PYVECSAKENTGVNEVFQLA--VGLTIKKSFSFSKKSCVIL 203
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 126 bits (303), Expect = 5e-30
Identities = 54/85 (63%), Positives = 66/85 (77%)
Frame = +1
Query: 253 RVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHF 432
RVDGK V+LALWDTAGQE+Y+RLRP+SY +IL+ F++DSPDSLEN+ KW E+
Sbjct: 50 RVDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTL 109
Query: 433 CPNVPIILVGNKKDLRNDPATINEL 507
CPNVP ILVG K DLR+DP I E+
Sbjct: 110 CPNVPFILVGMKADLRSDPVAIEEM 134
Score = 69.3 bits (162), Expect = 6e-13
Identities = 31/42 (73%), Positives = 35/42 (83%)
Frame = +2
Query: 125 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD 250
IR+KLV+VGDGACGKT LL VF+ FP YVPTVFENYV+D
Sbjct: 7 IRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSD 48
Score = 46.0 bits (104), Expect = 7e-06
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Frame = +2
Query: 530 ETAEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVK----KKKKTRCSLL 688
++ + +A++I A Y+ECS+ + +GV +VFE ATRAAL V+ K T+C ++
Sbjct: 143 KSQQAELVAQRIGARKYMECSSLTGDGVDDVFEAATRAALTVRDSENDKSSTKCCII 199
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 117 bits (282), Expect = 2e-27
Identities = 51/79 (64%), Positives = 61/79 (77%)
Frame = +1
Query: 277 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIIL 456
L L+DTAGQEDYDRLRPLSYP TDV L+CFSV SP S EN+ EKW PEV H CP VP ++
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLI 112
Query: 457 VGNKKDLRNDPATINELPK 513
VG + DLR+DP+ +L +
Sbjct: 113 VGTQIDLRDDPSVQQKLAR 131
Score = 58.8 bits (136), Expect = 9e-10
Identities = 24/40 (60%), Positives = 31/40 (77%)
Frame = +2
Query: 134 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI 253
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTV 44
Score = 44.4 bits (100), Expect = 2e-05
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Frame = +2
Query: 539 EGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQ--VKKKKKTRCSLL 688
+G +A ++ A Y+ECSA +++G++ VF+ A AAL V KKK++C +L
Sbjct: 141 QGERLARELGAVKYVECSALTQKGLKNVFDEAIVAALDPPVPHKKKSKCLVL 192
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 108 bits (259), Expect = 1e-24
Identities = 48/75 (64%), Positives = 58/75 (77%)
Frame = +1
Query: 256 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFC 435
VDG +EL+LWDTAGQE+YD+LR LSY DT VI++CF+VDS DSLEN+ KW PEV C
Sbjct: 56 VDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNC 115
Query: 436 PNVPIILVGNKKDLR 480
P V ++LV K DLR
Sbjct: 116 PGVKLVLVALKCDLR 130
Score = 65.3 bits (152), Expect = 1e-11
Identities = 30/53 (56%), Positives = 37/53 (69%)
Frame = +2
Query: 95 SSASSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI 253
SS I +K+VI+GDGA GKT LL VF+K FP+VY PT+FENY+ DI
Sbjct: 2 SSCFGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDI 54
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = +2
Query: 512 NEARACETAEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 664
+ ++ + EG A A+KINA YLECSAK GV E F A R AL + +
Sbjct: 138 DHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAARVALAAQPR 188
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 52.8 bits (121), Expect = 6e-08
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 259 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCP 438
+ V+L +WDTAGQE Y L P+ Y + + ++ + + SLE + W E++ P
Sbjct: 60 ENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEK-AKSWIKELQRQAP 118
Query: 439 -NVPIILVGNKKDLRNDPATINE 504
+ I L GNK DL + + +
Sbjct: 119 EGIVIALAGNKLDLAQERRAVEK 141
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 92 SSSASSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 229
+S+ + + I +KLV++GD A GK+ L++ F KDQF + T+
Sbjct: 2 ASNTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTI 47
Score = 30.7 bits (66), Expect = 0.26
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +2
Query: 515 EARACETAEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 664
E RA E A+ A A + N + E SAK+ E V E+F TA L ++ K
Sbjct: 135 ERRAVEKADAEAYAAEANLL-FFETSAKTAENVNELF-TAIAKKLPLEDK 182
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 52.8 bits (121), Expect = 6e-08
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +1
Query: 256 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFC 435
++GK V+L +WDTAGQE + + Y I++ + V DS N+ ++W E+ +
Sbjct: 52 LEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNV-KQWLQEIDRYA 110
Query: 436 -PNVPIILVGNKKDL 477
V +LVGNK D+
Sbjct: 111 VEGVNRLLVGNKSDM 125
Score = 39.1 bits (87), Expect = 8e-04
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 134 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 229
KL+++GD GK+CLL+ F+ D + E Y+ T+
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTI 41
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 52.8 bits (121), Expect = 6e-08
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +1
Query: 256 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK-HF 432
+D K+++ +WDTAGQE Y + Y L+ + + S +N+ +W E++ H
Sbjct: 54 LDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNV-GRWLKELREHA 112
Query: 433 CPNVPIILVGNKKDL 477
N+ I+LVGNK DL
Sbjct: 113 DSNIVIMLVGNKTDL 127
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 134 KLVIVGDGACGKTCLLIVFSKDQF 205
K V++GD GK+ LL+ F++++F
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEF 35
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 52.8 bits (121), Expect = 6e-08
Identities = 26/73 (35%), Positives = 41/73 (56%)
Frame = +1
Query: 256 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFC 435
+DGK+++L +WDTAGQE + + Y IL+ + V S +N+ ++ +H
Sbjct: 53 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHAS 112
Query: 436 PNVPIILVGNKKD 474
NV IL+GNK D
Sbjct: 113 ENVYKILIGNKCD 125
Score = 38.7 bits (86), Expect = 0.001
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 134 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 229
KL+++GD GK+CLL+ FS+D F ++ T+
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTI 42
Score = 29.1 bits (62), Expect = 0.80
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +2
Query: 515 EARACETAEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 667
+ R +G+A+A+++ +LE SAK+ V E F T R ++KK+K
Sbjct: 128 DQRQVSFEQGQALADELGV-KFLEASAKTNVNVDEAFFTLAR---EIKKQK 174
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 52.4 bits (120), Expect = 8e-08
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +1
Query: 256 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK-HF 432
++ + V L LWDTAGQE + L P D+ V ++ + + + +S N EKW +V+
Sbjct: 55 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVRAER 113
Query: 433 CPNVPIILVGNKKDL 477
+V I+LVGNK DL
Sbjct: 114 GDDVIIVLVGNKTDL 128
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2
Query: 122 AIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEWMENK 271
++RK KLV +G+ + GKT L+ F DQF Y T+ ++++ ++E++
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDR 58
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 52.0 bits (119), Expect = 1e-07
Identities = 26/66 (39%), Positives = 37/66 (56%)
Frame = +1
Query: 283 LWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVG 462
+WDTAGQE LR Y ++ F V S + +N+P W V+ C N+PI+L G
Sbjct: 62 VWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCG 120
Query: 463 NKKDLR 480
NK D++
Sbjct: 121 NKVDVK 126
Score = 29.1 bits (62), Expect = 0.80
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 134 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 229
KLV+VGDG GKT + +F + Y+ T+
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATL 42
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 48.8 bits (111), Expect = 9e-07
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 265 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN- 441
K+++L +WDTAGQE + + Y ++ + V + DS E + W +++ P+
Sbjct: 60 KRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEEL-SSWLSDIRAMAPST 118
Query: 442 VPIILVGNKKDLRN 483
+ ++L G+K DL+N
Sbjct: 119 ICVVLAGSKSDLQN 132
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 134 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI 253
K+V+ G GK+CLL F K+Q+ + TV ++ + I
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRI 50
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 47.6 bits (108), Expect = 2e-06
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Frame = +1
Query: 256 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPE-VKHF 432
VD K V L LWDTAGQE + L Y D ++ + V++ S E + + W E +
Sbjct: 52 VDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETL-DSWRDEFLIQA 110
Query: 433 CPN----VPIILVGNKKDLRNDPATINE 504
P+ P IL+GNK D+ +++
Sbjct: 111 SPSNPETFPFILLGNKVDVEEQKRMVSK 138
Score = 29.1 bits (62), Expect = 0.80
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 509 QNEARACETAEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQ 652
+ + R ++ A + Y E SAK V+E FET + AL+
Sbjct: 130 EEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALE 177
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 46.4 bits (105), Expect = 5e-06
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Frame = +1
Query: 256 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFC 435
VD K V L LWDTAGQE + L Y D ++ ++V++ S +++ E W E +
Sbjct: 52 VDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSV-ENWRQEFLYQT 110
Query: 436 PN----VPIILVGNKKD 474
P I+VGN+ D
Sbjct: 111 SQDECAFPFIIVGNQID 127
Score = 33.5 bits (73), Expect = 0.037
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 134 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV 244
K+VI+GD GKTCL+ F +F Y T+ +++
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFL 46
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 578 YLECSAKSKEGVREVFETATRAALQ 652
+ E SAK V ++FET +R AL+
Sbjct: 154 HFEASAKENTNVTDLFETVSRLALE 178
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 37.9 bits (84), Expect = 0.002
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 241 RCRHRVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPE 420
R + +DG+ L + DTAGQE+Y +R + L+ +++ S S + I +
Sbjct: 46 RKKCEIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQI 105
Query: 421 VK-HFCPNVPIILVGNKKDL 477
++ P++LV NK DL
Sbjct: 106 LRVKDKDTFPVVLVANKCDL 125
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 134 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY 241
KLV+VGDG GK+ L I + F + Y PT+ ++Y
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSY 45
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 521 RACETAEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 670
R AEG +A+ ++ Y+E SAK + V E F + R + K ++
Sbjct: 129 RVVSRAEGEQLAKSMHCL-YVETSAKLRLNVEEAFYSLVRTIRRYNKSEE 177
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 36.3 bits (80), Expect = 0.005
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +1
Query: 262 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN 441
G++ + DTAGQ++Y L ++ +S+ S S E + + H
Sbjct: 51 GQEFATEIIDTAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTE 110
Query: 442 -VPIILVGNKKDLRNDPATINE 504
VPI++VGNK DL A E
Sbjct: 111 WVPIVVVGNKSDLHMQRAVTAE 132
Score = 31.5 bits (68), Expect = 0.15
Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +2
Query: 116 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEW 259
MA I+ +++ ++G + GK+ L + + ++ F E Y PT+ + +I++
Sbjct: 1 MAPIKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKY 49
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 29.9 bits (64), Expect = 0.46
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 461 ATKKTSATIPPPSTSFQNEARACE-TAEGRAMAEKINAFAYLECSAKSKEGV 613
+T+K S T+P P TSF + R+ + + A+A + F L ++ S G+
Sbjct: 139 STRKRSLTVPTPRTSFPHHPRSRRFSLKNAAIATSYHKFKPLSSNSLSSSGM 190
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 29.5 bits (63), Expect = 0.61
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 271 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPI 450
V L L DT Q D + L+ ++C S E + W P + NVPI
Sbjct: 51 VSLVLVDT--QSDSNEREYLAAEIKKANVICLVYSDNYSYERVSIFWLPYFRSLGVNVPI 108
Query: 451 ILVGNK-KDLRN 483
+L NK +DL N
Sbjct: 109 VLCENKSEDLDN 120
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 134 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV 244
K+ ++GD + GKT L++ + + F E T+ N++
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFM 48
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Frame = +2
Query: 479 ATIPPPSTSFQNEARACETAEGRAMAEKINAFAYLECSAK-------SKEGVREVFETAT 637
+T PS++ N++ + G+A +E N +Y + S++ +E + E
Sbjct: 424 STSQEPSSNANNQSSPTSSINGKASSESANGTSYSKGSSRRNSKNETDEEKRKSFLERNR 483
Query: 638 RAALQVKKKKK 670
+AAL+ +++KK
Sbjct: 484 QAALKCRQRKK 494
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 116 MAAIRKK--LVIVGDGACGKTCLL 181
+ I KK ++VGD A GKTC+L
Sbjct: 1863 ITCINKKWPCILVGDTATGKTCIL 1886
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 7.5
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +2
Query: 467 KKTSATIPPPSTSFQNEARACETAEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAA 646
KK S + Q++A + + EG+ A K+ E KS E ++V ETA AA
Sbjct: 54 KKASHKRSKKLKAHQDKAES-KVNEGKNEAAKV----VKEEDLKSSETGKDV-ETAAAAA 107
Query: 647 LQVKKKKKTR 676
KKKKK +
Sbjct: 108 AAAKKKKKNK 117
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 382 DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 480
DS E + WTPE+ + V +I + +K +R
Sbjct: 367 DSKEQLLAYWTPEITNQPARVALISIPSKSTIR 399
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 204 N*SLLNTISRHVLPHAPSPTITNFLRIAAIGPELAEEE 91
N L N +S+H + P T+ FLR PE +E
Sbjct: 355 NDDLQNLLSKHRISRIPMSTVNAFLRAEDSIPESFSDE 392
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 179 LIVFSKDQFPEVYVPTVFENYVADIEWMENKWNWLCGIPLAKKITIGCGR 328
+I+ +K + E VF N ++ ++W E K + + KK+ + CG+
Sbjct: 820 MILKTKHKVLEEKGQAVFRNRLSKLKWTEEKPSSKNVLEALKKVHVLCGK 869
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 183 ISRHVLPHAPSPTITNFLRIAAIG 112
I H+LP+ TITNF R+ G
Sbjct: 188 IENHLLPNELPLTITNFFRLGTPG 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,449,071
Number of Sequences: 5004
Number of extensions: 70977
Number of successful extensions: 264
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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