Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40062
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    27   0.16 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.6  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 233 ENY-VADIEWMENKWNWLCGIPLAKKIT 313
           E+Y + D++W+ N W   C    AKK+T
Sbjct: 74  EDYRILDVDWLHNIWRPDCFFKNAKKVT 101


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 238 LRCRHRVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 357
           LR +  V G  +E   W+ A +E  D LR    PD  +++
Sbjct: 536 LRLKCPVAGYPIEEIKWERANRELPDDLRQKVLPDGTLVI 575


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 238 LRCRHRVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 357
           LR +  V G  +E   W+ A +E  D LR    PD  +++
Sbjct: 536 LRLKCPVAGYPIEEIKWERANRELPDDLRQKVLPDGTLVI 575


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 634 NQSRIT-GQEEEED*VFSAVSVLLSGKL 714
           +Q+ +T G+E++ +  FS +SVLL G L
Sbjct: 4   SQNNLTDGKEDQPENTFSLLSVLLVGFL 31


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 165 PHAPSPTITNFLRIAAIGPELAEEEHHHIVPS 70
           P  P PT+T+    +A  P   + + H+ VP+
Sbjct: 181 PEPPVPTVTSACVGSAYTPLKEDHDDHYGVPT 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,069
Number of Sequences: 438
Number of extensions: 4890
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)