Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40059
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    40   6e-04
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    40   6e-04
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    40   6e-04
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   3.3  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   3.3  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.4  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   4.4  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    26   5.8  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    26   7.7  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 18/34 (52%), Positives = 23/34 (67%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EK H+ +VVIGH   G+STTTG  +    GGI
Sbjct: 2   GKEKGHINVVVIGHVDSGKSTTTGHLIY-KCGGI 34


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 18/34 (52%), Positives = 23/34 (67%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EK H+ +VVIGH   G+STTTG  +    GGI
Sbjct: 2   GKEKGHINVVVIGHVDSGKSTTTGHLIY-KCGGI 34


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 18/34 (52%), Positives = 23/34 (67%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EK H+ +VVIGH   G+STTTG  +    GGI
Sbjct: 2   GKEKGHINVVVIGHVDSGKSTTTGHLIY-KCGGI 34


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 761 VPDDDNVKVSLFLAPFVVSGVTRLF*FSNRF*TSKYVILFKSKFRMLSIC 612
           V D  N+ +S+F  PFV+      + +  RF  ++ +  F   F  +S+C
Sbjct: 94  VGDQYNIMISIFYIPFVLCAFPFSYLY-KRFGAARILPFFMLSFGAMSLC 142


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -3

Query: 464 HIHLHNIKKYTTSTFIKRVCCQIMLMLIYFMT*ATGLTFTTVKLYISH 321
           H  L N   Y         CC IML+L Y    A GL F T++ + SH
Sbjct: 580 HYVLENDSLYKNRVLPFTYCCSIMLVLAY----AIGLWF-TLRTHASH 622


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 210 NRVLIQCENTFDISSSNAFRLLNIET 133
           +R L+QC N FD   + A  LLN+ T
Sbjct: 61  DRYLLQCPNDFDARFNKARLLLNMAT 86


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 729 KTHLYIVVIGHATPGRSTTTGSFV 800
           K H+ IV IGH   G+ST  G+ +
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNIL 259


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 829 GWPIPPTFGRTNDPVVVDLPGVA 761
           GWP  PTF ++ND V + L GV+
Sbjct: 497 GWPGDPTFRKSND-VCIALIGVS 518


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 729 KTHLYIVVIGHATPGRSTTTGSFVLPNVGGIGQPYPSG 842
           K+ L + VIG+   G+S+   + V  +  G   P P+G
Sbjct: 267 KSSLTVGVIGYPNVGKSSVINALVNRSANGRSAPCPAG 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,457,643
Number of Sequences: 5004
Number of extensions: 71700
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)