Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40059
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0548 + 4099386-4099847,4100435-4101316                           44   2e-04
03_01_0547 + 4093196-4093657,4094267-4095148                           44   2e-04
03_01_0544 + 4082528-4082989,4083585-4084466                           44   2e-04
03_01_0543 + 4076981-4077442,4078145-4079026                           44   2e-04
09_04_0327 + 16700235-16700312,16701756-16701978,16702488-167027...    31   1.5  
01_03_0012 + 11638363-11638476,11638854-11640678,11641855-116420...    30   2.0  
09_02_0116 + 4420808-4421323,4421367-4421918                           29   4.6  
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026     29   6.1  
02_04_0462 + 23131433-23132836                                         29   6.1  

>03_01_0548 + 4099386-4099847,4100435-4101316
          Length = 447

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EKTH+ IVVIGH   G+STTTG  +   +GGI
Sbjct: 2   GKEKTHINIVVIGHVDSGKSTTTGHLIY-KLGGI 34


>03_01_0547 + 4093196-4093657,4094267-4095148
          Length = 447

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EKTH+ IVVIGH   G+STTTG  +   +GGI
Sbjct: 2   GKEKTHINIVVIGHVDSGKSTTTGHLIY-KLGGI 34


>03_01_0544 + 4082528-4082989,4083585-4084466
          Length = 447

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EKTH+ IVVIGH   G+STTTG  +   +GGI
Sbjct: 2   GKEKTHINIVVIGHVDSGKSTTTGHLIY-KLGGI 34


>03_01_0543 + 4076981-4077442,4078145-4079026
          Length = 447

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EKTH+ IVVIGH   G+STTTG  +   +GGI
Sbjct: 2   GKEKTHINIVVIGHVDSGKSTTTGHLIY-KLGGI 34


>09_04_0327 +
           16700235-16700312,16701756-16701978,16702488-16702730,
           16702815-16702865,16702965-16703225,16703319-16703371,
           16703446-16703815,16703906-16704750
          Length = 707

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = -3

Query: 785 GGGPAGSRVPDDDNVKVSLFLA 720
           GGGPA  R  DD NV   LFLA
Sbjct: 16  GGGPAAGRETDDSNVWKDLFLA 37


>01_03_0012 +
           11638363-11638476,11638854-11640678,11641855-11642096,
           11642198-11642327,11642464-11642774
          Length = 873

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 432 NINVHKTSLLSNNAYVNIFYDVSDGPNVYNSEV 334
           N + H T LL N   +NIF D +  P V+NS +
Sbjct: 516 NPDSHSTGLLGNFRSINIFLDKNFVPKVFNSNL 548


>09_02_0116 + 4420808-4421323,4421367-4421918
          Length = 355

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 709 TTNGARKRLTFT-LSSSGTRLPAGPPPLGHLSY 804
           T  G R  LTF  L SS +  PA PP LGH  +
Sbjct: 6   TATGRRAALTFRRLFSSHSAAPAPPPLLGHFHH 38


>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
          Length = 961

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 694 LVTPLTTNGARKRLTFTLSSSGTRLPAGPPP 786
           L+TP+ T G   ++  TL+  GT L AGPPP
Sbjct: 425 LLTPIATAGDLTKIQATLNLVGT-LFAGPPP 454


>02_04_0462 + 23131433-23132836
          Length = 467

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 714 KWGQEKTHLYIVVIGHATPGRSTTTG--SFVLPNVGG 818
           K+ + K H+ I  IGH   G++T T   + VL +VGG
Sbjct: 63  KFERTKPHVNIGTIGHVDHGKTTLTAALTMVLASVGG 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,698,310
Number of Sequences: 37544
Number of extensions: 405045
Number of successful extensions: 921
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)