Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40059
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation fact...    41   0.001
U51994-8|AAO21382.1|   77|Caenorhabditis elegans Elongation fact...    41   0.001
U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    41   0.001
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    41   0.001
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    41   0.001
AL117200-4|CAB60584.1|  401|Caenorhabditis elegans Hypothetical ...    33   0.34 
U97003-5|AAB52272.1|  353|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF024497-1|AAB70344.1|  329|Caenorhabditis elegans Hypothetical ...    29   5.5  

>U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation factor
           protein 4, isoformc protein.
          Length = 267

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EK H+ IVVIGH   G+STTTG  +    GGI
Sbjct: 2   GKEKVHINIVVIGHVDSGKSTTTGHLIY-KCGGI 34


>U51994-8|AAO21382.1|   77|Caenorhabditis elegans Elongation factor
           protein 4, isoformb protein.
          Length = 77

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EK H+ IVVIGH   G+STTTG  +    GGI
Sbjct: 2   GKEKVHINIVVIGHVDSGKSTTTGHLIY-KCGGI 34


>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EK H+ IVVIGH   G+STTTG  +    GGI
Sbjct: 2   GKEKVHINIVVIGHVDSGKSTTTGHLIY-KCGGI 34


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EK H+ IVVIGH   G+STTTG  +    GGI
Sbjct: 2   GKEKVHINIVVIGHVDSGKSTTTGHLIY-KCGGI 34


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EK H+ IVVIGH   G+STTTG  +    GGI
Sbjct: 2   GKEKVHINIVVIGHVDSGKSTTTGHLIY-KCGGI 34


>AL117200-4|CAB60584.1|  401|Caenorhabditis elegans Hypothetical
           protein Y50E8A.7 protein.
          Length = 401

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +1

Query: 523 DVITRTFVHVQNRDVFYDSVDIGQIVMKKLQMLSMRNLDLNKITYFE 663
           ++I +T ++    D   D VD+ +I+MK++    + + DL+  T+F+
Sbjct: 327 NIIAQTILYFSKDDQITDEVDVREIIMKQMGPGLIESYDLDHFTHFD 373


>U97003-5|AAB52272.1|  353|Caenorhabditis elegans Hypothetical
           protein F47C10.7 protein.
          Length = 353

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 604 SLLSALCPQNHRIHPYSERGRKYA*LRLQKHHDRLLTLYC-VQYTLYNTFIYITLRNIQH 428
           ++LS L   N  IHP SER R+    R QK +   L  YC + Y       +  L +I H
Sbjct: 259 AMLSVLLFCNPAIHPLSERTRRLLATR-QKSYSSTLLQYCLLSYQQSGPSRFADLLSISH 317


>AF024497-1|AAB70344.1|  329|Caenorhabditis elegans Hypothetical
           protein ZC308.4 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 612 QFFHYYLPYVHRIIEYIPILNVDESTRN 529
           ++FHYYL    RI++++ +   D   RN
Sbjct: 110 RYFHYYLAASQRIVQHVKLRESDSPFRN 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,100,480
Number of Sequences: 27780
Number of extensions: 404759
Number of successful extensions: 971
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)