Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40059
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    40   2e-05
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    40   2e-05
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   2.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   2.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.7  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EK H+ IVVIGH   G+STTTG  +    GGI
Sbjct: 2   GKEKIHINIVVIGHVDSGKSTTTGHLIY-KCGGI 34


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EK H+ IVVIGH   G+STTTG  +    GGI
Sbjct: 2   GKEKIHINIVVIGHVDSGKSTTTGHLIY-KCGGI 34


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 399 NNAYVNIFYDVSDGPNVYNSEV 334
           NN   N FY  S+G N  NS+V
Sbjct: 136 NNYNDNYFYSKSNGSNSSNSDV 157


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 837 MGTVGQSPPHLVGQMTQWWWTCRES 763
           M T G   P    +M +WWW  + S
Sbjct: 349 METRGFLQPVCQNEMNKWWWNMKIS 373


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -1

Query: 790 PVVVDLPGV 764
           PVVVDLPGV
Sbjct: 347 PVVVDLPGV 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,654
Number of Sequences: 438
Number of extensions: 5135
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)