Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40058
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    28   1.5  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    27   3.6  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   4.7  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = -3

Query: 326 YLFKLLNIALLFFVIYCISRLIQSVLFRLYSQFCDKRNNSLNKFLTIK*KAAVYQSVDRL 147
           Y  +LLN+ +L  + + ++   +     L   +  ++N+ L     ++   ++  S D +
Sbjct: 50  YYDELLNVRILRELPFTVNSNYKKNNALLLLHYLTRKNHGLFLLSKLQSLLSLDPSTDPI 109

Query: 146 PVYRDAL 126
           PVYRDAL
Sbjct: 110 PVYRDAL 116


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 248 FRLYSQFCDKRNNSLNKFL 192
           FRLY  FC++  N L+K L
Sbjct: 294 FRLYEVFCEETKNDLSKLL 312


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 187  IVRNLFKELLRLSQNWLYNLNKTLCIRREMQ*ITKNNNAILSNLNRYMDSFKKKRSL 357
            +VRNL +  L L      NLNK   + +     T +N   L+  ++ ++    K S+
Sbjct: 1781 VVRNLNESQLSLDSVISMNLNKEFALTKTENDFTDDNGRALNYFSQKLEELDPKNSV 1837


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,580,545
Number of Sequences: 5004
Number of extensions: 73246
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)