Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40058
         (886 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   4.1  
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    24   5.4  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    24   5.4  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 100  DICQRKLSGHGVVDNIDAFAIATLSLRWIF 11
            D C  K++G G + N+DA +   +SL+ +F
Sbjct: 937  DECTEKIAGLGALPNVDA-SYQKMSLKSLF 965


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 250 KTLCIRREMQ*ITKNNNAILSNLNRYMDSFKKKRSLE 360
           K++ I +E++   K ++ +   LN Y   FKKK S +
Sbjct: 115 KSIDINKELE--GKEDDKVYRGLNNYTQFFKKKDSAQ 149


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 250 KTLCIRREMQ*ITKNNNAILSNLNRYMDSFKKKRSLE 360
           K++ I +E++   K ++ +   LN Y   FKKK S +
Sbjct: 115 KSIDINKELE--GKEDDKVYRGLNNYTQFFKKKDSAQ 149


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 900,977
Number of Sequences: 2352
Number of extensions: 18518
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95093730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)