Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40058
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   3.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   8.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 310 SISHYYFLLFIAFRVLYKVSCS 245
           ++  +Y  LF+  +V YK+ C+
Sbjct: 207 TLGSFYIPLFVMIQVYYKIFCA 228


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 634 NM*ACNQSYVNQIIYHASYL 693
           NM AC   Y N+ +  ASYL
Sbjct: 198 NMTACGTDYFNRGLLSASYL 217


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 634 NM*ACNQSYVNQIIYHASYL 693
           NM AC   Y N+ +  ASYL
Sbjct: 74  NMTACGTDYFNRGLLSASYL 93


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 515 TAVRKKTPLDIFVQ 474
           TAVRK T  D+F++
Sbjct: 4   TAVRKMTKRDVFIE 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,359
Number of Sequences: 438
Number of extensions: 5481
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)