Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40057
         (871 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   3.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   7.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.5  
AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    21   9.5  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 401 ATPSSSQQIKVAAVTPQGVTRIVSGVSTPGTVRVSTHS 514
           +T SSSQ ++        +  +++ + +PG+ + ST S
Sbjct: 384 STDSSSQSVEDPQQVEAAIVHLIANLPSPGSDQRSTPS 421


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 769 VKIWYE*CSCKNSRRNALYKVVLQTTNKIAT 861
           VKIW++    KN + +       Q  N  AT
Sbjct: 287 VKIWFQNRRMKNKKNSQRQAAQQQNNNNAAT 317


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 12  WPALNTVTTYLLQVQKCGKVTP 77
           +P+L  +TT++ + + CG   P
Sbjct: 387 FPSLAAMTTHMKEAKHCGVNVP 408


>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 601 VPVKLSAGNMPVKLAGNAVPLKIGTT 678
           VP+     N  VKLA     L +GTT
Sbjct: 62  VPIITRVINEEVKLASGDYTLPVGTT 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,965
Number of Sequences: 336
Number of extensions: 3830
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23996456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)