Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40057
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    27   3.5  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    26   8.0  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   8.0  

>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 410 SSSQQIKVAAVTPQGVTRIVSGVSTPGTVRVSTHS 514
           S S     +  + +GVT  VSG +TP +VR ST +
Sbjct: 360 SDSPMTPNSVYSNEGVTSSVSGNATPASVRQSTQN 394


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 858 GNFVGSLQHHLVKGIPPAVFTRTLLVPNLDITAPKF 751
           GN    +QHH+ KG  P +    +  P  DI   ++
Sbjct: 492 GNLEERIQHHISKGESPTLAAEDVETPWFDIYVKEY 527


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 631 AYYQHSTSQEQHHSRLFSLVRNAAYRRL-QRPI-LTQSVHQTVCRDTYGS 488
           ++   S      +S++   +R    +R+ + P+ L QS H+T+  D+YG+
Sbjct: 25  SFSSRSELDNNTNSKISRRLRELVCQRMGENPLRLRQSFHETISNDSYGN 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,244,630
Number of Sequences: 5004
Number of extensions: 60890
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)