Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40057
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0313 + 2216498-2216953 34 0.13
11_06_0682 - 26253319-26253575,26254009-26254114 32 0.52
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638... 31 0.91
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 31 1.2
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230... 31 1.6
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989 30 2.1
11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931 29 4.8
01_06_1175 + 35138871-35139009,35139117-35139429,35139791-35140094 29 4.8
11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747 29 6.4
08_02_0986 + 23328056-23328145,23328289-23329227,23329313-233295... 29 6.4
>07_01_0313 + 2216498-2216953
Length = 151
Score = 34.3 bits (75), Expect = 0.13
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -3
Query: 737 PAVTCPTFCTLL-GVNFP*MLVVPIFSGTALPASLTGILPALNFTGTAPLPPVFTCT*RG 561
PA+ PT T++ V P + VP + +PA T +PA+ +P V T
Sbjct: 47 PAMPKPTIPTIVPAVTLPPIPAVPKVTLPPMPAIPT--VPAVTMPPMPAVPAVPAVTLPP 104
Query: 560 VPAPPEADPNTICAPDCV 507
+PA P PNT+ P V
Sbjct: 105 MPAVPTVPPNTVVVPAAV 122
>11_06_0682 - 26253319-26253575,26254009-26254114
Length = 120
Score = 32.3 bits (70), Expect = 0.52
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +2
Query: 365 QAKAIVKSPANPATPSSSQQIKVAAVTPQGVTRIVSGVSTPGTVRVSTHSLVHRLC*DRP 544
+ +++ +P P TPSSS A TP+G + + V PG+ ++T SL L DRP
Sbjct: 48 RTQSMPTTPTTPVTPSSSSPTTTATTTPRG-SNVWRSVFHPGS-NLATKSLGANLF-DRP 104
>04_04_1268 -
32262994-32263017,32263411-32263488,32263653-32263800,
32263890-32264127,32264210-32264420,32264499-32264680,
32264765-32264866,32265009-32266317,32266906-32266988,
32267436-32267559
Length = 832
Score = 31.5 bits (68), Expect = 0.91
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 463 NRKWRLDTRNRTCLYTQSGAQIVLGSASGGAGTPRYVQVKTGGSGAVPVKLSAGNMPVKL 642
NR + T + L + + +VL + G V TGG GA V L +GN+ ++L
Sbjct: 160 NRDNPITTPSSAMLAISNSSDLVLSDSKGRTVWTTMANV-TGGDGAYAVLLDSGNLVLRL 218
Query: 643 AGN 651
+ N
Sbjct: 219 SNN 221
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 463 NRKWRLDTRNRTCLYTQSGAQIVLGSASGGAGTPRYVQVKTGGSGAVPVKLSAGNMPVKL 642
NR + + L+ + + +VL + G + TGGSGA V L++GN+ ++
Sbjct: 2458 NRDNPITAPSSAMLFISNSSDLVLSESGGHTLWEARNNITTGGSGATVVLLNSGNLVLRS 2517
Query: 643 AGNAV 657
+ +
Sbjct: 2518 PNHTI 2522
>11_06_0495 -
24319531-24320831,24320923-24321109,24322919-24323062,
24324467-24324469
Length = 544
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 755 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 615
S G + A+ F T +GV F ++V P+++ PAS G+L +L
Sbjct: 180 SLGGSYAALMAARFVTSVGVGFA-VVVAPVYAVEISPASSRGVLSSL 225
>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
Length = 476
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 755 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 615
S + A+ F T +GV F ++V P+++ PAS G+L +L
Sbjct: 113 SLGATYAALMAARFVTSVGVGFS-LVVAPVYNAEISPASARGVLSSL 158
>11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931
Length = 478
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 755 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 615
S + A+ F T +GV F +V P+++ PAS G+L +L
Sbjct: 115 SLGATYAALMAARFVTSVGVGFA-RVVAPVYNAEISPASTRGVLTSL 160
>01_06_1175 + 35138871-35139009,35139117-35139429,35139791-35140094
Length = 251
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -1
Query: 295 CSRCYFLRSRDD--WCTIGEATVTTT 224
C CY LR +D WC G TVT T
Sbjct: 78 CGSCYELRCDNDGQWCLPGSVTVTAT 103
>11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747
Length = 471
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 755 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 615
S + A+ F T +GV F ++V P+++ PAS G++ L
Sbjct: 116 SLGATYAALMAARFVTSVGVGFS-LVVAPVYNAEISPASARGVVSTL 161
>08_02_0986 +
23328056-23328145,23328289-23329227,23329313-23329570,
23330384-23330692
Length = 531
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -1
Query: 349 SWSARRDFYGGSLSRQFECSRCYFLRSRDDWCTIGEATVTTTRAFVSDGVMGIDEETGED 170
SW R +GGS + + F D GE+ T+ + GV G +E GE+
Sbjct: 456 SWFQRGAPWGGSTVKARRRNDTMFAPVTDQCAQGGESGATSGEVTEASGVGGRAQEKGEE 515
Query: 169 RPK 161
R K
Sbjct: 516 RRK 518
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,719,458
Number of Sequences: 37544
Number of extensions: 464152
Number of successful extensions: 1469
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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