Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40057
         (871 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9)                     33   0.23 
SB_4313| Best HMM Match : Zip (HMM E-Value=1.7e-39)                    29   3.7  
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)           29   3.7  
SB_25448| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_14410| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_3238| Best HMM Match : Chorion_3 (HMM E-Value=1.6)                  29   3.7  
SB_32653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            28   8.6  
SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)               28   8.6  

>SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9)
          Length = 1217

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 415 LSTDQSG---RGDAARCDKNRKWRLDTRNRTCLYTQSGAQIVLGSASGGAGTP 564
           L +D+ G    G  AR DK    RLD      +YT  GAQ+ + S+  GAG P
Sbjct: 231 LFSDEGGTYNNGKQARADKAGLGRLDRSVEAFVYTVLGAQVNVRSSIAGAGGP 283


>SB_4313| Best HMM Match : Zip (HMM E-Value=1.7e-39)
          Length = 318

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +1

Query: 289 WNTQTVCSSCHRKSH--AGHSNYETVIP 366
           ++++T C SCH+K+    GHS+ ET  P
Sbjct: 76  FDSRTSCPSCHKKARFFHGHSHVETTAP 103


>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
          Length = 605

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = -3

Query: 653 ALPASLTGILPALNF-TGTAPLPPVFTCT*----RGVPAPPEADPNTICAP 516
           A P +L  + P   F TG  P PP+         R  P  P+ADPN + +P
Sbjct: 488 ARPQALQNVYPPQRFETGFVPRPPIPMAPQAPYYRNYPFNPQADPNPVGSP 538


>SB_25448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 538

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 475 RLDTRNRTCLYTQSGAQIVLGSASGGAGTPRYVQVKTGGS 594
           RLD      +YT  GAQ+ + S+  GAG P   + K  G+
Sbjct: 169 RLDRSVEAFVYTVLGAQVNVRSSIAGAGGPAMAETKPVGA 208


>SB_14410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 475 RLDTRNRTCLYTQSGAQIVLGSASGGAGTPRYVQVKTGGS 594
           RLD      +YT  GAQ+ + S+  GAG P   + K  G+
Sbjct: 69  RLDRSVEAFVYTVLGAQVNVRSSIAGAGGPAMAETKPVGA 108


>SB_3238| Best HMM Match : Chorion_3 (HMM E-Value=1.6)
          Length = 318

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 475 RLDTRNRTCLYTQSGAQIVLGSASGGAGTP 564
           RLD      +YT  GAQ+ +GS+  GAG P
Sbjct: 113 RLDRSVEAFVYTVLGAQVNVGSSIAGAGGP 142


>SB_32653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 538 ILTQSVHQTVCRDTYGSWCRDATYDSC-HTLRRHRGH 431
           IL + +H+T CR  Y       +YD+C H    H  H
Sbjct: 124 ILRKPLHKTPCRGAYDEEAPTQSYDTCMHDEMEHMVH 160


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
 Frame = -3

Query: 770 TLPHQSFKGRFPAVTCPTFCTLLGVNFP*ML-----VVPIFSGTALPASLTGILPALNFT 606
           TLP   F  +   VT P    L     P M+     V P  +  A P+S+    PA+   
Sbjct: 294 TLPVTLFTPQAAPVTPPMGAQLPETEQPQMVAPSSTVTPPVTEPAPPSSVVAPPPAVPTP 353

Query: 605 GTAP-----LPPVFTCT*RGVPAPPEADPNTICA 519
            TAP      PP    +  GVP P +A P ++ A
Sbjct: 354 ATAPPPVVAPPPSVFASSSGVPTPVKAPPPSVFA 387


>SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)
          Length = 521

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -1

Query: 337 RRDFYGGSLSRQFECSRCYFLRSR----DDWCTIGEATVTTTRAFVSDGVMGIDEETGED 170
           R++  G    R   C+RC++  S+    + W   G      +R+ +S+     DE   E+
Sbjct: 167 RQEDLGPCDERSTTCTRCHYPSSQTTIEETWYEDGSGPQEVSRSQISESGSSGDESADEN 226

Query: 169 RPK 161
           +PK
Sbjct: 227 QPK 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,757,093
Number of Sequences: 59808
Number of extensions: 516827
Number of successful extensions: 1724
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)