Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40057
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical ... 31 0.81
AC006814-2|AAP46269.1| 430|Caenorhabditis elegans Aldehyde dehy... 31 1.4
AC006814-1|AAP46268.1| 499|Caenorhabditis elegans Aldehyde dehy... 31 1.4
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical pr... 28 10.0
U67953-5|AAL13330.2| 287|Caenorhabditis elegans Male abnormal p... 28 10.0
U64849-1|AAC48052.3| 936|Caenorhabditis elegans Daf-12, redunda... 28 10.0
AY742796-1|AAW59416.1| 287|Caenorhabditis elegans MAB-7 protein. 28 10.0
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 28 10.0
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 28 10.0
>AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical
protein Y47D3B.6 protein.
Length = 269
Score = 31.5 bits (68), Expect = 0.81
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Frame = -3
Query: 737 PAVTCPTFCTLLGVNFP*MLV----VPIFSGTALPASLTGILPALNFTGTAPLPPVFTCT 570
PAV + C P M+ +P ++ LPA LPA F AP PVF
Sbjct: 36 PAVCQASVCIPTAAAPPMMMAPPAPLPAYAPAPLPAYAPAPLPAPVFAAPAP-APVFAAP 94
Query: 569 *RGVPAPP-EADPNTICAPDCV 507
PAP A P CA C+
Sbjct: 95 FAAPPAPVIAAQPALGCAAPCL 116
>AC006814-2|AAP46269.1| 430|Caenorhabditis elegans Aldehyde
dehydrogenase protein12, isoform b protein.
Length = 430
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 386 SPANPATPSSSQQIKVAAVTPQGVTRIVSGVSTPGTVRVSTHSLVHRL 529
SP PA+P +I AA P+GV ++ G G V + H+LV ++
Sbjct: 186 SPFAPASPVLLGEILTAAGVPKGVYNVIQGEQEAG-VALCEHNLVAKV 232
>AC006814-1|AAP46268.1| 499|Caenorhabditis elegans Aldehyde
dehydrogenase protein12, isoform a protein.
Length = 499
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 386 SPANPATPSSSQQIKVAAVTPQGVTRIVSGVSTPGTVRVSTHSLVHRL 529
SP PA+P +I AA P+GV ++ G G V + H+LV ++
Sbjct: 186 SPFAPASPVLLGEILTAAGVPKGVYNVIQGEQEAG-VALCEHNLVAKV 232
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 380 VKSPANPATPSSSQQIKVAAVTPQGVTRIVSGVSTPGTVRVSTHSLV 520
V +P + ++ ++P+ VT IV STP T VST S+V
Sbjct: 466 VHTPNAETNSTQGNSSPISTISPEPVT-IVKPASTPATDSVSTPSVV 511
>Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical
protein F35E2.5 protein.
Length = 575
Score = 27.9 bits (59), Expect = 10.0
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Frame = +2
Query: 260 IITTPQKVTPGTLKLSAQXXXXXXXXXXXXXXQSFQAKAIVKSPANPATPSSSQQIKVAA 439
+ TTP KVTP T L A A V + N P ++ +
Sbjct: 353 LTTTPVKVTPATTTLPTTSLALETTTTATRTTAKITAVATV-ARTNTTQPPTTTPLSSTT 411
Query: 440 VTPQGVTRIVSGVSTPG-TVRVSTH 511
P +T S ST G + + STH
Sbjct: 412 ALPTTLTSSSSTESTDGSSTQTSTH 436
>U67953-5|AAL13330.2| 287|Caenorhabditis elegans Male abnormal
protein 7 protein.
Length = 287
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 508 CRDTYGSWCRDATYDSCHTLRRHRGHFDL 422
CR+ Y S R A D CHT+ FD+
Sbjct: 71 CRNIYKSCDRWAVEDKCHTILTQTNFFDV 99
>U64849-1|AAC48052.3| 936|Caenorhabditis elegans Daf-12, redundant
with protein 1 protein.
Length = 936
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 259 NHHDSSKSNTWNTQTVCSSCHRKSHAGHS 345
N + + NT +C++C R H GHS
Sbjct: 859 NFYRCTTCNTTERNAICTNCIRTCHRGHS 887
>AY742796-1|AAW59416.1| 287|Caenorhabditis elegans MAB-7 protein.
Length = 287
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 508 CRDTYGSWCRDATYDSCHTLRRHRGHFDL 422
CR+ Y S R A D CHT+ FD+
Sbjct: 71 CRNIYKSCDRWAVEDKCHTILTQTNFFDV 99
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 380 VKSPANPATPSSSQQIKVAAVTPQGVTRIVSGVSTPGTVRVSTHSLV 520
V +P + ++ ++P+ VT IV STP T VST S+V
Sbjct: 466 VHTPNAETNSTQGNSSPISTISPEPVT-IVKPASTPATDSVSTPSVV 511
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 380 VKSPANPATPSSSQQIKVAAVTPQGVTRIVSGVSTPGTVRVSTHSLV 520
V +P + ++ ++P+ VT IV STP T VST S+V
Sbjct: 466 VHTPNAETNSTQGNSSPISTISPEPVT-IVKPASTPATDSVSTPSVV 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,687,343
Number of Sequences: 27780
Number of extensions: 372192
Number of successful extensions: 1160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -