Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40057
         (871 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to a...    29   5.3  
At1g02910.1 68414.m00258 tetratricopeptide repeat (TPR)-containi...    29   5.3  
At1g61080.1 68414.m06877 proline-rich family protein                   28   9.3  

>At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to
           alpha-expansin 4 precursor GI:16923355 from [Cucumis
           sativus]; alpha-expansin gene family, PMID:11641069
          Length = 263

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 547 GGAGTPRYVQVKTGGSGAVPVKLSAG---NMPVKLAGNAVPLKIGTTN 681
           GGAG  +YVQVK   +G + +K + G        L G  +  ++ TT+
Sbjct: 190 GGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTD 237


>At1g02910.1 68414.m00258 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 453

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +1

Query: 562 PRYVQVKTGGSGAVPVKLSAGNMPVKLAGNAVPLKIGTTNIQGKLTPNSVQKVGQVTAGN 741
           PR VQ   GG GA  +  + GN  + + G  V + +       K     VQ     T   
Sbjct: 220 PRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLFLWE-NKKEEEQMVQITRDETLSR 278

Query: 742 LPLKL 756
           LPL+L
Sbjct: 279 LPLRL 283


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = -3

Query: 677 VVPI--FSGTALPASLTGILPALNFTGTAPLPPVFTCT*RGVPAPPEAD--PNTICAP 516
           V+P+  F+    P     ++P  +F    P PP F       P PP     P TI AP
Sbjct: 466 VMPLKHFAPPPPPPLPPAVMPLKHFAPPPPTPPAFKPLKGSAPPPPPPPPLPTTIAAP 523


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,481,453
Number of Sequences: 28952
Number of extensions: 341239
Number of successful extensions: 926
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)