Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40056
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    30   0.50 
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    29   0.88 
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    29   0.88 
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    29   0.88 
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    27   2.7  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   3.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   8.2  

>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +3

Query: 369 SFHGSAGKILTAAKVPPPPPVRTTSQLSG---TKYGYVDHNNYNYCPEIEKTVASLNNTE 539
           SF GS  K   AA  PPPP +R ++ LS    T    +     +Y   +++T+A +    
Sbjct: 558 SFFGSKNKKRLAAMEPPPPVLRASTTLSDREKTDTEVIKLLIMSYFNIVKRTLADM---- 613

Query: 540 MNHNLCLSYISYDDSHV 590
           +  ++ L  I Y   H+
Sbjct: 614 VPKSISLKMIKYSKEHI 630


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 175 TEGADGNKENSNKEKRVSSVDDTDVGRRRTMINLL*V-VISPRGTWSILLQ 324
           TE ADG K+NS      SS   T  G+R  + N++   V+SP GT  I+++
Sbjct: 558 TESADGKKDNSGSISSNSS--KTFTGKRVRLGNVIESNVVSPDGTNRIVIE 606


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = -1

Query: 437 GAHRWWWRNFSSGQYFTGATMKTLAHKLTSFQVRVRPTCSRILQVPLGE--ITT*RRFII 264
           G +R WW  F+S   F        +  L SFQ  + P     + + LG        RFII
Sbjct: 528 GINRGWWAAFTSSSLFDNLGYSLNSDSLNSFQKAIFPQVLGTILIFLGNTFFPIMLRFII 587

Query: 263 -VRLRPTSVS 237
            + +R T  S
Sbjct: 588 WIMIRTTRFS 597


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 555 CLSYISYDDSHVNLMIYGESAVTKLSYCCHQSHDSPRTKPCEERLLPPFS 704
           CL+  +YD S +N +++ E  V  L        + P T    E +LP FS
Sbjct: 48  CLNLENYDGSFLNYLLHEEEKVYALVRRYASPEEYPFTDNLPEPILPKFS 97


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 294 SEGHLEYSAASGTNPNLERSKLMRKSFHGSAGKILTAAKV 413
           SE  +E    +    N+E+SKL  ++ HG  GK+   A++
Sbjct: 353 SELEIEVKPKTTALDNIEKSKLSEENEHGIKGKLKQLAEI 392


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 372 FHGSAGKILTAAKVPPPPPVRTTSQLSG 455
           F  +   I +++  PPPPP R +   SG
Sbjct: 226 FQQTTSPIFSSSSTPPPPPPRPSQPTSG 253


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 312  YSAASGTNPNLERSKLMRKSFHGSAGKILTAAKVPPPPPV 431
            Y A  G   +L   K +++  +     +   A  PPPPP+
Sbjct: 1849 YKAKLGEKSHLHYDKELKRWVNDDGSDLSNQAAPPPPPPM 1888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,719,139
Number of Sequences: 5004
Number of extensions: 82296
Number of successful extensions: 262
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)