Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40056
         (881 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_42870| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_59311| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.0036)        28   8.7  

>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 255 KTNDDKSPLSGYLSEGHLEYSAASGTNPNLERSKLMRK 368
           KT+D  S  +G  S  HL+Y  A      LER    RK
Sbjct: 755 KTDDSASSTTGGTSSKHLDYDQAERNEDTLERMARSRK 792


>SB_42870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 752 FGPC*IRLCPLKWFTGQHFGLAPFFP 829
           F P  +R+C   + TG++FG  P FP
Sbjct: 96  FTPFHVRVCESSYGTGKYFGAHPAFP 121


>SB_59311| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.0036)
          Length = 198

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +3

Query: 630 SYCCHQSHDSPRT 668
           SYC  QSHDSPRT
Sbjct: 135 SYCLVQSHDSPRT 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,369,192
Number of Sequences: 59808
Number of extensions: 642063
Number of successful extensions: 2109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2099
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)