Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40056
         (881 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC142702-1|AAI42703.1|  355|Homo sapiens vacuolar protein sortin...    31   5.5  
BC141827-1|AAI41828.1|  355|Homo sapiens vacuolar protein sortin...    31   5.5  
AL834261-1|CAD38936.1|  377|Homo sapiens hypothetical protein pr...    31   5.5  
BC128390-1|AAI28391.1| 1682|Homo sapiens ADAMTSL3 protein protein.     31   7.3  
BC128389-1|AAI28390.1| 1691|Homo sapiens ADAMTS-like 3 protein.        31   7.3  
AB033059-1|BAA86547.1| 1023|Homo sapiens KIAA1233 protein protein.     31   7.3  

>BC142702-1|AAI42703.1|  355|Homo sapiens vacuolar protein sorting
           37 homolog C (S. cerevisiae) protein.
          Length = 355

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 772 PLPIEVVHRPTFWAGPLFPQFP 837
           P P  VV +P+F++GPL P +P
Sbjct: 225 PAPFPVVSQPSFYSGPLGPTYP 246


>BC141827-1|AAI41828.1|  355|Homo sapiens vacuolar protein sorting
           37 homolog C (S. cerevisiae) protein.
          Length = 355

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 772 PLPIEVVHRPTFWAGPLFPQFP 837
           P P  VV +P+F++GPL P +P
Sbjct: 225 PAPFPVVSQPSFYSGPLGPTYP 246


>AL834261-1|CAD38936.1|  377|Homo sapiens hypothetical protein
           protein.
          Length = 377

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 772 PLPIEVVHRPTFWAGPLFPQFP 837
           P P  VV +P+F++GPL P +P
Sbjct: 247 PAPFPVVSQPSFYSGPLGPTYP 268


>BC128390-1|AAI28391.1| 1682|Homo sapiens ADAMTSL3 protein protein.
          Length = 1682

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 749  GFGPC*IRLCPLKWFT 796
            GF PC IR CP +WFT
Sbjct: 1474 GFEPCNIRDCPARWFT 1489


>BC128389-1|AAI28390.1| 1691|Homo sapiens ADAMTS-like 3 protein.
          Length = 1691

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 749  GFGPC*IRLCPLKWFT 796
            GF PC IR CP +WFT
Sbjct: 1474 GFEPCNIRDCPARWFT 1489


>AB033059-1|BAA86547.1| 1023|Homo sapiens KIAA1233 protein protein.
          Length = 1023

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 749 GFGPC*IRLCPLKWFT 796
           GF PC IR CP +WFT
Sbjct: 806 GFEPCNIRDCPARWFT 821


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,215,730
Number of Sequences: 237096
Number of extensions: 3229139
Number of successful extensions: 12734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12683
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)