Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40056
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97196-13|AAK68666.1|  430|Caenorhabditis elegans Altered averme...    31   0.83 
U41113-1|AAC25482.1|  430|Caenorhabditis elegans inhibitory amin...    31   0.83 
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    31   1.4  
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U00033-8|AAC48294.1|  315|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z73974-2|CAA98271.2|  713|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U97196-13|AAK68666.1|  430|Caenorhabditis elegans Altered
           avermectin sensitivityprotein 14, isoform b protein.
          Length = 430

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = -2

Query: 304 CPSER*PLKGDLSSFVFVLRQCRQRRRHVFLY*NFLCCRQHPLLNRASIGFSFVSILPLI 125
           CPS+R PL+ DLS++  V R    +R    L  N    R+  L++R +   +F S   LI
Sbjct: 361 CPSDRPPLRLDLSAYRSVKRLPIIKRISEILSTNIDISRRVDLMSRLTFPLTFFSF--LI 418

Query: 124 TFFVSCV 104
            ++V+ V
Sbjct: 419 FYYVAYV 425


>U41113-1|AAC25482.1|  430|Caenorhabditis elegans inhibitory amino
           acid receptorsubunit gbr-2B protein.
          Length = 430

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = -2

Query: 304 CPSER*PLKGDLSSFVFVLRQCRQRRRHVFLY*NFLCCRQHPLLNRASIGFSFVSILPLI 125
           CPS+R PL+ DLS++  V R    +R    L  N    R+  L++R +   +F S   LI
Sbjct: 361 CPSDRPPLRLDLSAYRSVKRLPIIKRISEILSTNIDISRRVDLMSRLTFPLTFFSF--LI 418

Query: 124 TFFVSCV 104
            ++V+ V
Sbjct: 419 FYYVAYV 425


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/64 (26%), Positives = 25/64 (39%)
 Frame = +3

Query: 312  YSAASGTNPNLERSKLMRKSFHGSAGKILTAAKVPPPPPVRTTSQLSGTKYGYVDHNNYN 491
            Y  A G    L  S ++ +      GK  T     PPPP      L   ++G +   +Y+
Sbjct: 868  YHGAIGQRVGLVPSNMVIEIASDDIGKRRTTTNPAPPPPTAPEPALRRQRWGSLKSRSYD 927

Query: 492  YCPE 503
            Y  E
Sbjct: 928  YAGE 931


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 321 ASGTNPNLERSKLMRKSFHGSAGKILTAAKVPPPPP 428
           AS  +P+L+R   M++S +    +  +  K PPPPP
Sbjct: 693 ASYISPDLQRDSSMQRSEYSRPFRPTSRPKTPPPPP 728


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 321 ASGTNPNLERSKLMRKSFHGSAGKILTAAKVPPPPP 428
           AS  +P+L+R   M++S +    +  +  K PPPPP
Sbjct: 693 ASYISPDLQRDSSMQRSEYSRPFRPTSRPKTPPPPP 728


>U00033-8|AAC48294.1|  315|Caenorhabditis elegans Hypothetical
           protein F37C12.2 protein.
          Length = 315

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 372 FHGSAGKILTAAKVPPPPPVRTTSQLSGT 458
           F   +G  + A K+PPPP V  +S L+GT
Sbjct: 133 FSDISGACMRALKLPPPPVVPFSSMLAGT 161


>Z73974-2|CAA98271.2|  713|Caenorhabditis elegans Hypothetical
           protein F29F11.4 protein.
          Length = 713

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 393 ILTAAKVPPPPPVRTTSQLSGTKYGYVDHNNYNYCPEIEKTVASLNN 533
           +++   +PPPPP R  +  S  +        Y+  PEI+ T   LN+
Sbjct: 609 LISRPGMPPPPPSRPLNLASPLRTLLEKEQKYDEDPEIQLTPRRLNS 655


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,937,490
Number of Sequences: 27780
Number of extensions: 477956
Number of successful extensions: 1574
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)