Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40054
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 101 1e-22
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 2.1
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 3.7
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 3.7
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 8.5
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 25 8.5
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 8.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 8.5
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 8.5
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 101 bits (241), Expect = 1e-22
Identities = 47/85 (55%), Positives = 63/85 (74%)
Frame = +2
Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGS 433
++F+ R+ILPKP K+RV QKRPRSRTLT+V++AILED+VFP EI+GKR R DG
Sbjct: 92 VIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATDGR 149
Query: 434 QLIKVHLDKNQQTTIEHKVDTFQSV 508
+ IKV LD T+++K+ +F SV
Sbjct: 150 KTIKVFLDNRDANTVDYKLGSFSSV 174
Score = 82.2 bits (194), Expect = 5e-17
Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Frame = +3
Query: 3 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 176
KI+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSPATKLVLLTNKR 326
P LKAF K Q RL RELEKKF+ +H + R P K +T KR
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRK-SRVTQKR 114
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 514 KLTGREVTFEFP 549
KLTG+ VTFEFP
Sbjct: 177 KLTGKNVTFEFP 188
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 338 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF 499
++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKF 615
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 322 KEATLKDIDLCVRCYPRGLGLPC 390
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 449 HLDKNQQTTIEHKVDTFQSVT 511
H+D NQQT ++H+ F+SVT
Sbjct: 967 HID-NQQTLLQHRNQWFESVT 986
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3
Query: 340 P*AWPLLFVSNTSFVAGLRQDLTVSN 263
P A +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 165 IYVPMPKLKAFQKIQIRLVRELEKKFSGKH 254
+++P K F+KI+ +VRE E+K +GK+
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKN 129
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 284 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 409
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +2
Query: 431 SQLIKVHLDKNQQTTIEHKVDTFQSVTRS*RDA-K*PSSSPNLICKPS 571
+ L + L+++QQ + ++D+F+ + ++ R+ + SS+PN+ K S
Sbjct: 95 NSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEESSSNPNISRKQS 142
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 471 VCWFLSKCTLMSCEPSNLTLMR 406
+C FL K T SC NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,945
Number of Sequences: 5004
Number of extensions: 44013
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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