Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40054
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)              124   6e-29
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        29   3.8  
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)                  28   5.0  
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                28   5.0  
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           27   8.8  
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)           27   8.8  
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score =  124 bits (299), Expect = 6e-29
 Identities = 61/100 (61%), Positives = 77/100 (77%)
 Frame = +3

Query: 3   KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 182
           KI+K  G  A+ FE  ISQA++ELE NSD+KAQLRELYI+ AKEI++  KK+III+VP+P
Sbjct: 10  KIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVPVP 69

Query: 183 KLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSPATK 302
           +++AFQKIQ RLVRELEKKFSGKH  ++   R    P  K
Sbjct: 70  QIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRK 109



 Score = 36.7 bits (81), Expect = 0.014
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +2

Query: 449 HLDKNQQTTIEHKVDTFQSV 508
           HLDK QQTTI+HK++TF +V
Sbjct: 121 HLDKTQQTTIDHKLETFSTV 140


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
 Frame = +3

Query: 6    IIKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHNKKSIIIYV 173
            ++++SG   +S E+   +     E N+ LK +L E    L +T+ +E E+ N K + +YV
Sbjct: 1681 VLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-NDKLMALYV 1734

Query: 174  PMPKLKAFQKIQIRLVRELEKK 239
             M KL++ Q        ELEK+
Sbjct: 1735 NMSKLESTQGTLEEKNAELEKE 1756


>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
          Length = 1552

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 33  DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 200
           + ++T ++     L  +  L+  +RELY    +E E   KKS++ ++ + PK+K  +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 85   PTSKPNFGSFTLQKLKKLNYTIRS 156
            P S  N+G FT+++LK  +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
 Frame = +1

Query: 64  WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 162
           WS+ KPTP  KPN        FG   T Q L+K N+ +  RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166


>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 474 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 367
           V+CW L + + +  EP N  L +L ++  GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373


>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
          Length = 151

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +3

Query: 171 VPMPKLKAFQKIQIRLVRELEKKFSG 248
           VP+P++ A QK++ +L R++E+K +G
Sbjct: 69  VPLPQVSAMQKVKGKL-RDMEQKLNG 93


>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
 Frame = +3

Query: 24  AEADSFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKL 188
           A+  +   +  Q   E++T+ + K  +RE  ITK K +     E   +++++    + K+
Sbjct: 237 AQRKTLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKV 296

Query: 189 KAFQKIQIRLVRELEKKF---SGKH*SLLETVR 278
               + + + +RE+E++F     K+ ++LE  R
Sbjct: 297 AKLYEEEKQDLREMEQEFQNMEAKYNAILEERR 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,124,893
Number of Sequences: 59808
Number of extensions: 331688
Number of successful extensions: 791
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)