BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV40054 (600 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 108 3e-24 U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 29 3.3 Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical pr... 27 7.7 >Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical protein ZC434.2 protein. Length = 194 Score = 108 bits (260), Expect = 3e-24 Identities = 50/88 (56%), Positives = 68/88 (77%), Gaps = 1/88 (1%) Frame = +2 Query: 254 LVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 430 ++ + R+ILPKP ++ KQKRPRSRTLT+V+DA L++LV+PAE+VG+RIRVKLDG Sbjct: 91 ILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVKLDG 150 Query: 431 SQLIKVHLDKNQQTTIEHKVDTFQSVTR 514 ++ KVHLDK+ QT + HK+ F SV R Sbjct: 151 KKVYKVHLDKSHQTNVGHKIGVFASVYR 178 Score = 105 bits (251), Expect = 3e-23 Identities = 48/83 (57%), Positives = 63/83 (75%) Frame = +3 Query: 3 KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 182 K++K+ G E +SQAL++LETN D+++QL+ELYI KE+EL NK +IIIYVP+P Sbjct: 7 KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66 Query: 183 KLKAFQKIQIRLVRELEKKFSGK 251 +LKAF KI LVRELEKKF G+ Sbjct: 67 QLKAFHKIHPALVRELEKKFGGR 89 Score = 31.5 bits (68), Expect = 0.48 Identities = 11/15 (73%), Positives = 15/15 (100%) Frame = +1 Query: 511 KKLTGREVTFEFPEP 555 +KLTG++VTFEFP+P Sbjct: 178 RKLTGKDVTFEFPDP 192 >U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical protein F07F6.4 protein. Length = 529 Score = 28.7 bits (61), Expect = 3.3 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = +1 Query: 67 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 177 S+SK T F SF Q ++K YT S SSS R Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412 >Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical protein F45H11.3 protein. Length = 738 Score = 27.5 bits (58), Expect = 7.7 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -2 Query: 89 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 3 V VGFE RLRD+GL +LS +D L Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,719,252 Number of Sequences: 27780 Number of extensions: 248130 Number of successful extensions: 603 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 588 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 603 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1279376318 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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