Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40054
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 89 2e-18
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 89 2e-18
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 86 1e-17
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 84 8e-17
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 84 8e-17
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 1.0
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 1.0
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 2.4
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD... 27 7.2
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 9.5
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 89.0 bits (211), Expect = 2e-18
Identities = 47/99 (47%), Positives = 67/99 (67%), Gaps = 2/99 (2%)
Frame = +3
Query: 3 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 176
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSP 293
KAF+KI +RLVRELEKKFSGK + T R P
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPP 105
Score = 82.2 bits (194), Expect = 2e-16
Identities = 40/87 (45%), Positives = 61/87 (70%)
Frame = +2
Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGS 433
++FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR R +LDG+
Sbjct: 93 VIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGT 148
Query: 434 QLIKVHLDKNQQTTIEHKVDTFQSVTR 514
+++KV LD + E+K++T V R
Sbjct: 149 KIMKVFLDSKLKNDTEYKLETMVGVYR 175
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 89.0 bits (211), Expect = 2e-18
Identities = 47/99 (47%), Positives = 67/99 (67%), Gaps = 2/99 (2%)
Frame = +3
Query: 3 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 176
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSP 293
KAF+KI +RLVRELEKKFSGK + T R P
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPP 105
Score = 82.2 bits (194), Expect = 2e-16
Identities = 40/87 (45%), Positives = 61/87 (70%)
Frame = +2
Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGS 433
++FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR R +LDG+
Sbjct: 93 VIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGT 148
Query: 434 QLIKVHLDKNQQTTIEHKVDTFQSVTR 514
+++KV LD + E+K++T V R
Sbjct: 149 KIMKVFLDSKLKNDTEYKLETMVGVYR 175
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 86.2 bits (204), Expect = 1e-17
Identities = 48/102 (47%), Positives = 67/102 (65%), Gaps = 2/102 (1%)
Frame = +3
Query: 3 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 176
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSPATK 302
KAF+KI RLVRELEKKFSGK + T R + P K
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKD-VIFVTTRRIMRPPKK 107
Score = 85.0 bits (201), Expect = 3e-17
Identities = 42/87 (48%), Positives = 61/87 (70%)
Frame = +2
Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGS 433
++FV R+I+ P V +RPR+RTLTSV++A+LED+ FPAEIVGKR R +LDGS
Sbjct: 93 VIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLDGS 148
Query: 434 QLIKVHLDKNQQTTIEHKVDTFQSVTR 514
+++KV LD ++ E+K++T V R
Sbjct: 149 KIMKVFLDAKEKNNTEYKLETMVGVYR 175
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 83.8 bits (198), Expect = 8e-17
Identities = 41/85 (48%), Positives = 62/85 (72%)
Frame = +2
Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGS 433
++ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR R +LDG+
Sbjct: 93 VILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGT 148
Query: 434 QLIKVHLDKNQQTTIEHKVDTFQSV 508
+++KV LD ++ E+KV+ F +V
Sbjct: 149 KIMKVFLDPKERNNTEYKVEAFSAV 173
Score = 81.8 bits (193), Expect = 3e-16
Identities = 42/99 (42%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Frame = +3
Query: 3 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 176
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSP 293
KA++KI +RLVRELEKKFSGK L+ T R P
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPP 105
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 511 KKLTGREVTFEFP 549
KKLTG++V FEFP
Sbjct: 175 KKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 83.8 bits (198), Expect = 8e-17
Identities = 41/85 (48%), Positives = 62/85 (72%)
Frame = +2
Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGS 433
++ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR R +LDG+
Sbjct: 93 VILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGT 148
Query: 434 QLIKVHLDKNQQTTIEHKVDTFQSV 508
+++KV LD ++ E+KV+ F +V
Sbjct: 149 KIMKVFLDPKERNNTEYKVEAFSAV 173
Score = 81.8 bits (193), Expect = 3e-16
Identities = 42/99 (42%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Frame = +3
Query: 3 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 176
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSP 293
KA++KI +RLVRELEKKFSGK L+ T R P
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPP 105
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 511 KKLTGREVTFEFP 549
KKLTG++V FEFP
Sbjct: 175 KKLTGKDVVFEFP 187
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 316 QTKEATLKDIDLCVRCYPRGLG 381
Q +E++LK CVRCYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 316 QTKEATLKDIDLCVRCYPRGLG 381
Q +E++LK CVRCYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 435 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 334
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 334
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 389 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSV 508
AE RI + +++I +HLD + T++ VD F+S+
Sbjct: 71 AEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESL 110
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 70 NSKPTPTSKPNFGSF 114
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,143,958
Number of Sequences: 28952
Number of extensions: 236957
Number of successful extensions: 642
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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