Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40052
(866 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80028-2|AAN73869.1| 351|Caenorhabditis elegans Serpentine rece... 32 0.61
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 9.9
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 9.9
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 9.9
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 9.9
U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channe... 28 9.9
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel... 28 9.9
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel... 28 9.9
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel... 28 9.9
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel... 28 9.9
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 9.9
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag... 28 9.9
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu... 28 9.9
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu... 28 9.9
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu... 28 9.9
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen... 28 9.9
>U80028-2|AAN73869.1| 351|Caenorhabditis elegans Serpentine
receptor, class h protein88 protein.
Length = 351
Score = 31.9 bits (69), Expect = 0.61
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +3
Query: 111 PLFNFYPWDITPGVHNKDFQ*CLVTPFIFKINYLGF 218
PLFNF+ W V F CLVTP+IF GF
Sbjct: 64 PLFNFHVWTCLADV----FLNCLVTPYIFLPTLTGF 95
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +3
Query: 3 P*VPG--AIPLPK----KGRVPGDPQIMVG*GRPILENLKAEPLFNFYPWDITPGVHNKD 164
P PG +P PK G +PG P + G P L K EP + P PG+ KD
Sbjct: 407 PGYPGNEGLPGPKGDKGDGGIPGAPGVSGPSGIPGLPGPKGEPGYRGTPGQSIPGLPGKD 466
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +3
Query: 3 P*VPG--AIPLPK----KGRVPGDPQIMVG*GRPILENLKAEPLFNFYPWDITPGVHNKD 164
P PG +P PK G +PG P + G P L K EP + P PG+ KD
Sbjct: 406 PGYPGNEGLPGPKGDKGDGGIPGAPGVSGPSGIPGLPGPKGEPGYRGTPGQSIPGLPGKD 465
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +3
Query: 3 P*VPG--AIPLPK----KGRVPGDPQIMVG*GRPILENLKAEPLFNFYPWDITPGVHNKD 164
P PG +P PK G +PG P + G P L K EP + P PG+ KD
Sbjct: 406 PGYPGNEGLPGPKGDKGDGGIPGAPGVSGPSGIPGLPGPKGEPGYRGTPGQSIPGLPGKD 465
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +3
Query: 3 P*VPG--AIPLPK----KGRVPGDPQIMVG*GRPILENLKAEPLFNFYPWDITPGVHNKD 164
P PG +P PK G +PG P + G P L K EP + P PG+ KD
Sbjct: 407 PGYPGNEGLPGPKGDKGDGGIPGAPGVSGPSGIPGLPGPKGEPGYRGTPGQSIPGLPGKD 466
>U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform f protein.
Length = 1418
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 626 DYQSKNVRHHFNFDKLSSPLKGL 558
DY++K V H +NFD L L L
Sbjct: 1294 DYRNKWVNHRYNFDNLGQALMSL 1316
>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform c protein.
Length = 1852
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 626 DYQSKNVRHHFNFDKLSSPLKGL 558
DY++K V H +NFD L L L
Sbjct: 1294 DYRNKWVNHRYNFDNLGQALMSL 1316
>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform a protein.
Length = 1837
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 626 DYQSKNVRHHFNFDKLSSPLKGL 558
DY++K V H +NFD L L L
Sbjct: 1294 DYRNKWVNHRYNFDNLGQALMSL 1316
>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform d protein.
Length = 1885
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 626 DYQSKNVRHHFNFDKLSSPLKGL 558
DY++K V H +NFD L L L
Sbjct: 1342 DYRNKWVNHRYNFDNLGQALMSL 1364
>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform e protein.
Length = 1844
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 626 DYQSKNVRHHFNFDKLSSPLKGL 558
DY++K V H +NFD L L L
Sbjct: 1301 DYRNKWVNHRYNFDNLGQALMSL 1323
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +3
Query: 3 P*VPG--AIPLPK----KGRVPGDPQIMVG*GRPILENLKAEPLFNFYPWDITPGVHNKD 164
P PG +P PK G +PG P + G P L K EP + P PG+ KD
Sbjct: 443 PGYPGNEGLPGPKGDKGDGGIPGAPGVSGPSGIPGLPGPKGEPGYRGTPGQSIPGLPGKD 502
>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
sensitive calciumchannel alpha1 subunit isoform D
protein.
Length = 1844
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 626 DYQSKNVRHHFNFDKLSSPLKGL 558
DY++K V H +NFD L L L
Sbjct: 1301 DYRNKWVNHRYNFDNLGQALMSL 1323
>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform C protein.
Length = 1852
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 626 DYQSKNVRHHFNFDKLSSPLKGL 558
DY++K V H +NFD L L L
Sbjct: 1294 DYRNKWVNHRYNFDNLGQALMSL 1316
>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform B protein.
Length = 1885
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 626 DYQSKNVRHHFNFDKLSSPLKGL 558
DY++K V H +NFD L L L
Sbjct: 1342 DYRNKWVNHRYNFDNLGQALMSL 1364
>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform A protein.
Length = 1837
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 626 DYQSKNVRHHFNFDKLSSPLKGL 558
DY++K V H +NFD L L L
Sbjct: 1294 DYRNKWVNHRYNFDNLGQALMSL 1316
>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-dependent
calcium channelalpha13 subunit protein.
Length = 1837
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 626 DYQSKNVRHHFNFDKLSSPLKGL 558
DY++K V H +NFD L L L
Sbjct: 1294 DYRNKWVNHRYNFDNLGQALMSL 1316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,619,186
Number of Sequences: 27780
Number of extensions: 406611
Number of successful extensions: 665
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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