Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40052
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.6  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   4.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   4.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 192 IFKINYLGFYQTKKGII 242
           I++  Y GFY T +G++
Sbjct: 188 IYRAAYFGFYDTARGML 204


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 192 IFKINYLGFYQTKKGII 242
           I++  Y GFY T +G++
Sbjct: 188 IYRAAYFGFYDTARGML 204


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 50  WGSPNNGGVRKAHFGKF 100
           WG+PN   V+   FGK+
Sbjct: 842 WGNPNRPIVQSGIFGKY 858


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = -1

Query: 194 NKWGDQTLLEILIMDPGGYIPRVKIKKGFGL*IFQNGPSLPHH 66
           N  G+ + + +    P GY P ++ + G      + G ++P H
Sbjct: 276 NDMGEVSYVSLDHPIPTGYYPTMRFRNGLAFPQRETGATVPLH 318


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = -1

Query: 194 NKWGDQTLLEILIMDPGGYIPRVKIKKGFGL*IFQNGPSLPHH 66
           N  G+ + + +    P GY P ++ + G      + G ++P H
Sbjct: 276 NDMGEVSYVSLDHPIPTGYYPTMRFRNGLAFPQRETGATVPLH 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,425
Number of Sequences: 438
Number of extensions: 5412
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)