Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40052
         (866 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22960.1 68415.m02727 serine carboxypeptidase S10 family prot...    29   5.3  
At3g44930.1 68416.m04840 cation/hydrogen exchanger, putative (CH...    28   7.0  

>At2g22960.1 68415.m02727 serine carboxypeptidase S10 family protein
           contains Pfam profile: PF00450 serine carboxypeptidase
           ;similar to sinapoylglucose:malate sinapoyltransferase
           GI:8699619 from [Arabidopsis thaliana]
          Length = 184

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 10  YPGPSPYQKKAGYLGIPK*WWGKE 81
           + GP P++ + GY+GI K W   E
Sbjct: 32  FEGPLPFELETGYIGIAKYWANDE 55


>At3g44930.1 68416.m04840 cation/hydrogen exchanger, putative
           (CHX10) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 731

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/52 (25%), Positives = 29/52 (55%)
 Frame = +3

Query: 297 CLYFNIPQINFIAMKFIISFISLYNYKKFSKLKN*YLTITKMIYIFCFIFNL 452
           CLY+ +P    +A+ FI+S+ S  ++  +  + +    I++  Y F  +++L
Sbjct: 326 CLYYKLPLSESLAVSFILSYKSFADFVLYEAVLD-DTYISQATYSFLILYSL 376


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,213,309
Number of Sequences: 28952
Number of extensions: 351099
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)