Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40051
         (860 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4J9F3 Cluster: Conserved Archaeal membrane protein; n=...    36   1.7  
UniRef50_Q8MXV9 Cluster: HrPEN-2 protein; n=1; Halocynthia roret...    35   3.0  

>UniRef50_Q4J9F3 Cluster: Conserved Archaeal membrane protein; n=1;
           Sulfolobus acidocaldarius|Rep: Conserved Archaeal
           membrane protein - Sulfolobus acidocaldarius
          Length = 548

 Score = 35.5 bits (78), Expect = 1.7
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -3

Query: 423 IITLSFIIHLQNVFCFVMEFVILSDKVY-SPYRCNTSIFFVQECVYFIKFSLTFG 262
           +I + +II  QN++ F+  +VIL   +Y    +  + IFF+   +YF++  + FG
Sbjct: 72  LIPIFYIILTQNIWLFLFTYVILGLGIYFRKLKLFSLIFFLASMIYFLQIRVFFG 126


>UniRef50_Q8MXV9 Cluster: HrPEN-2 protein; n=1; Halocynthia
           roretzi|Rep: HrPEN-2 protein - Halocynthia roretzi (Sea
           squirt)
          Length = 1255

 Score = 34.7 bits (76), Expect = 3.0
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = -3

Query: 354 SDKVYSPYRCNTSIFFVQECVYFIKFSLTFGQVKFI*FGIHSLVTNC 214
           S ++ S  R NTS+  V+EC++F+K S+T GQ       IH  V +C
Sbjct: 713 SKRLKSSLRSNTSVVHVKECIFFLK-SITVGQRP-----IHQFVLSC 753


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 778,685,787
Number of Sequences: 1657284
Number of extensions: 14774948
Number of successful extensions: 26224
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26218
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76243001646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)