Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40051
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   3.4  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   7.9  

>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 429 PEIITLSFIIHLQNVFCFVMEFVILSDKV 343
           P ++TLSFI + QN+ C  +E   +++KV
Sbjct: 356 PVLVTLSFINNWQNLICRRLEKQTVNEKV 384


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
 Frame = -3

Query: 666  SLPALTIHCCDAIFIHTTFYVGI*FPINNCQDNVFLLLGLV-MRLHCHLIQVRPNFVSQD 490
            ++P L       I  HT  Y  I +P +  +     L GLV   LH  L+ +     S+ 
Sbjct: 974  TIPILQSDSFVGILWHTIVYAYI-YPYDQGK-----LEGLVNTALHACLLVLMSEKGSEP 1027

Query: 489  DWWPSLCEVRFPVIT**QQ---GPEIITLSFIIHLQN--VFCFVMEFVILSDKV 343
             +   +CE RFPV+   Q+    P++   S +  ++N   F +V E + L  K+
Sbjct: 1028 IFSKKICENRFPVVEGLQEYCNSPDVTLFSVLCQMKNHRNFVYVKEKISLIMKI 1081


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 594 FPINNCQDNVFLLLGLVMRLHCHLIQVRPN 505
           FP++ CQD V  L+ +  +   +L+ V PN
Sbjct: 463 FPLSECQDVVDALIDVATQCLDNLLSVLPN 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,203
Number of Sequences: 5004
Number of extensions: 67165
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)