Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40051
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14272| Best HMM Match : Sugar_tr (HMM E-Value=0.0046)               29   4.9  
SB_58982| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_14272| Best HMM Match : Sugar_tr (HMM E-Value=0.0046)
          Length = 775

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -3

Query: 732 FAFFVKPDWHLIVGPVSIPGV 670
           FAFF++ DW +++  VSIPG+
Sbjct: 294 FAFFIR-DWRMLIVAVSIPGL 313


>SB_58982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -3

Query: 678 PGVSSLPALTIHCCDAIFIHTTFYVGI*FPINNCQDNVFLLLGLVMRLHCHLIQVRPNFV 499
           PG+ +     IH  D  F    F VGI  P+ + +  + L L   +R  C++  V  +  
Sbjct: 4   PGLWTSRDKPIHRAD--FAERAFTVGIGGPVGSGKTALVLALCKYLRDSCNICVVTNDIF 61

Query: 498 SQDDW 484
           +++DW
Sbjct: 62  TKEDW 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,489,239
Number of Sequences: 59808
Number of extensions: 473345
Number of successful extensions: 826
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)