Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40051
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100305-8|AAC68919.1|  179|Caenorhabditis elegans Hypothetical ...    29   5.6  
AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical ...    29   5.6  
Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>AF100305-8|AAC68919.1|  179|Caenorhabditis elegans Hypothetical
           protein W04B5.6 protein.
          Length = 179

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 402 IHLQNVFCFVMEFVILSDKVYSPYRCNTSIFFVQECVYFIKFSLT 268
           I+L  +F  V+   + SD     + C TS+ FV  C+Y +K+  T
Sbjct: 88  IYLVTIFSEVVFLKMGSDDAPISFLCFTSVLFVYACIY-VKYCKT 131


>AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical
           protein E02H9.6 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 402 IHLQNVFCFVMEFVILSDKVYSPYRCNTSIFFVQECVYFIKFSLT 268
           I+L  +F  V+   + SD     + C TS+ FV  C+Y +K+  T
Sbjct: 88  IYLVTIFSEVVFLKMGSDDAPISFLCFTSVLFVYACIY-VKYCKT 131


>Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical
           protein ZC506.4b protein.
          Length = 954

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -3

Query: 414 LSFIIHLQNVFCFVMEFVILSDKVYSPYRC---NTSIFFVQECVYFIKFSLT 268
           LS+I+ +  + C+ M FV+LS    S   C    T I F   C+Y   F  T
Sbjct: 674 LSYILLISMIMCYCMTFVLLSKP--SAIVCAIKRTGIGFAFSCLYSAMFVKT 723


>Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical
           protein ZC506.4a protein.
          Length = 999

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -3

Query: 414 LSFIIHLQNVFCFVMEFVILSDKVYSPYRC---NTSIFFVQECVYFIKFSLT 268
           LS+I+ +  + C+ M FV+LS    S   C    T I F   C+Y   F  T
Sbjct: 719 LSYILLISMIMCYCMTFVLLSKP--SAIVCAIKRTGIGFAFSCLYSAMFVKT 768


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,523,341
Number of Sequences: 27780
Number of extensions: 373014
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)