Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40051
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.7  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   6.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   8.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   8.4  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 464 TSQSEGHQSSWDTKLGLTWIR 526
           + ++ G+   WD  L L W+R
Sbjct: 214 SEEAPGNMGLWDQALALRWLR 234


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 464 TSQSEGHQSSWDTKLGLTWIR 526
           + ++ G+   WD  L L W+R
Sbjct: 214 SEEAPGNMGLWDQALALRWLR 234


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 132 ITCLM*NYNCIKNDTITLCSFC*FSKRQNI 43
           ITC +   + I+ND I L      + R+NI
Sbjct: 79  ITCALEKSHIIQNDEIQLDKLVEMANRKNI 108


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 419 MISGPCCY*VMTGNLTSQSEGHQSS 493
           MISG  CY +  G+ T+  +   SS
Sbjct: 360 MISGATCYALFLGHATNLIQSLDSS 384


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 419 MISGPCCY*VMTGNLTSQSEGHQSS 493
           MISG  CY +  G+ T+  +   SS
Sbjct: 328 MISGATCYALFLGHATNLIQSLDSS 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,805
Number of Sequences: 438
Number of extensions: 4759
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)