Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40050
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0434 - 22904790-22904927,22905220-22905318,22905404-229054...    89   4e-18
08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470           31   1.6  
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879     30   2.1  
05_01_0206 + 1487034-1489430                                           29   4.9  
12_02_0451 - 19179592-19179648,19179745-19179879,19180214-191802...    29   6.5  
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78...    29   6.5  

>02_04_0434 -
           22904790-22904927,22905220-22905318,22905404-22905472,
           22905582-22905683,22905750-22905824,22906293-22906417,
           22906511-22906589,22906933-22907074,22907200-22907441
          Length = 356

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
 Frame = +2

Query: 215 CDERYQSSSQAFNEDIKKLMPHHKTESKMERSKNL-YVVNEISEMKNCNKCILFEGRKMR 391
           C  R     +   +++  L+PH K +SK+E  ++    +NE+ E++NC+ C+ FE RK +
Sbjct: 74  CSRRINYRYRHLMQNVVSLLPHAKKDSKVESKQSKGNALNELLELRNCSSCLFFECRKQK 133

Query: 392 DLYMWISNIPNGPSAKFLVENIYTMGELKMTG 487
           DLY+W+   P GPS KFLV  ++TM ELK+TG
Sbjct: 134 DLYLWMVKSPGGPSVKFLVNAVHTMEELKLTG 165



 Score = 48.4 bits (110), Expect = 8e-06
 Identities = 37/105 (35%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
 Frame = +3

Query: 579 IFGVPNYHPKSQPFFDHVYTLMVLVTEFGFRNYQI-----------LSGRWVL*L-K*GP 722
           IF  P  H K++PF DHV+   ++     FRNYQI             G   + L + GP
Sbjct: 222 IFATPKDHRKAKPFHDHVFVFSIVDDHVWFRNYQISVPHNEIDKVDKGGLDKMTLVEVGP 281

Query: 723 RFVLNPVQIFSRIVGGCPIYGGNP*IPLGPWPNLRTGLIPRKSPG 857
           RF LNP++IF    GG  +Y      P    PN    L  RK  G
Sbjct: 282 RFCLNPIKIFGGSFGGPTLYEN----PFYVSPNQIRALEKRKKAG 322



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +3

Query: 192 NRQRVLVFAMRGINHRHRHLMK 257
           N+++VLV   R IN+R+RHLM+
Sbjct: 66  NKEKVLVTCSRRINYRYRHLMQ 87


>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
          Length = 675

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +2

Query: 191 KQTEGTRLCDERYQSSSQAFNEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCIL 370
           K TE      +R     QA  ED+K  + H K   +     N+ +V+E+ E+K     +L
Sbjct: 238 KLTEEKAAWRKREHKKVQAILEDMKADLEHEKKNRRQLEKINIKLVDELKEVKMAANNLL 297

Query: 371 FE---GRKMRDL 397
            E    RK R+L
Sbjct: 298 QEYDNERKTREL 309


>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
          Length = 696

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +2

Query: 224 RYQSSSQAFNEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFE---GRKMRD 394
           R     +A  ED+K  + H K   +     NL +VNE+ E K   K +L E    RK R+
Sbjct: 266 REHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQLLQEYDNERKARE 325

Query: 395 LYMWISN 415
           L   + N
Sbjct: 326 LTEEVCN 332


>05_01_0206 + 1487034-1489430
          Length = 798

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 135 PLPPVRMSSDPAPKQVKWINRQRVLVFAMRGINHRHRH 248
           P P    S  P+P    W  R ++L+ A RGI++ H +
Sbjct: 563 PKPNGSSSPSPSPVATSWKLRIKILLDASRGIDYLHSY 600


>12_02_0451 -
           19179592-19179648,19179745-19179879,19180214-19180247,
           19180347-19180423,19180523-19180598,19180792-19180925,
           19181772-19181878,19182505-19182808,19182913-19183218
          Length = 409

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 440 FLVENIYTMGE-LKMTGIV*EDLGF 511
           F+ +N YT  E LKM G+V  D+GF
Sbjct: 299 FITDNTYTKAEVLKMEGLVLNDMGF 323


>06_01_0094 +
           779097-779155,779882-781019,781732-782115,782842-783060
          Length = 599

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
 Frame = +2

Query: 626 SCVYPY---GISNRIWVQKLSDSVWKMGALAEIGTTIC--IESCPDILQDRWWVPHLWGK 790
           SC  P    G SN I+V K S    +     E+G  +   I+  PD   D  WV H +  
Sbjct: 346 SCTSPERWGGKSNWIYVAKPSGDSGEPWTAVELGQPVPSRIDRVPDFQVDNMWVAHAFSL 405

Query: 791 SLNS---IRSLA 817
            ++S   ++SLA
Sbjct: 406 MISSSSGVKSLA 417


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,099,094
Number of Sequences: 37544
Number of extensions: 585288
Number of successful extensions: 1348
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)