BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV40050 (880 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1 SB_53678| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 30 2.8 SB_35682| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0 SB_43214| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6 SB_8393| Best HMM Match : DUF662 (HMM E-Value=3.9e-26) 28 8.7 >SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 940 Score = 30.3 bits (65), Expect = 2.1 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +3 Query: 111 PVTKDENVPLPPV-RMSSDPAPKQVKWINRQR 203 PVT+ ++VP PPV S P V W+NR R Sbjct: 602 PVTEHDSVPCPPVTEHGSVPEHGSVPWMNRIR 633 >SB_53678| Best HMM Match : Peptidase_S8 (HMM E-Value=0) Length = 782 Score = 29.9 bits (64), Expect = 2.8 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = +3 Query: 54 FKAMVKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQRVLV 212 FK + + KK K + +E + + RM P +VKW+ RQRVL+ Sbjct: 77 FKFIKQAKKDDKGIDSVANDDGSEETIRMDEKRMLGHP---RVKWMERQRVLL 126 >SB_35682| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 181 Score = 29.1 bits (62), Expect = 5.0 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 8/51 (15%) Frame = -3 Query: 869 PKLGTRAFPRNKPCPKVWPGT-*WNLGISPINGAP-TND------PGEYLD 741 P+ G+ FP++ P K++P T +SP++ P TN+ PGEY D Sbjct: 119 PRRGSSHFPKDAPYKKIYPSTNTLYTSLSPLSRKPLTNECRDYSKPGEYQD 169 >SB_43214| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 424 Score = 28.7 bits (61), Expect = 6.6 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +3 Query: 108 EPVTKDENVPLPPVRMSSDPAPKQVKWINRQRVLVFAMRG 227 EP+T EN +PPV + K+V IN ++V M G Sbjct: 15 EPLTVGENGDIPPVEIKEIHLKKEVSLINGVALVVGVMIG 54 >SB_8393| Best HMM Match : DUF662 (HMM E-Value=3.9e-26) Length = 319 Score = 28.3 bits (60), Expect = 8.7 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = +2 Query: 221 ERYQSSSQAFNEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNK 361 +RY+ + + F E KL H KTE K +++LY + + +E + K Sbjct: 215 KRYERAEKEFVES--KLDLHRKTERKEMLTEHLYAIIQENEQRKAKK 259 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 29,094,901 Number of Sequences: 59808 Number of extensions: 672310 Number of successful extensions: 1596 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1466 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1594 length of database: 16,821,457 effective HSP length: 82 effective length of database: 11,917,201 effective search space used: 2502612210 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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