Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40050
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical pr...   108   4e-24
Z79757-7|CAF31478.1|  314|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    30   2.5  
U18384-1|AAA62504.1|  293|Caenorhabditis elegans collagen protein.     29   3.3  
Z68227-14|CAJ80809.1|  448|Caenorhabditis elegans Hypothetical p...    29   5.8  
Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    28   7.7  

>L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical
           protein K12H4.3 protein.
          Length = 352

 Score =  108 bits (260), Expect = 4e-24
 Identities = 47/92 (51%), Positives = 66/92 (71%)
 Frame = +2

Query: 212 LCDERYQSSSQAFNEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFEGRKMR 391
           LC       ++   +DIK L+PH K +SK+++ K+L V+NEI+EMKNC K + FE RK +
Sbjct: 68  LCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLNVLNEIAEMKNCTKVMYFESRKRK 127

Query: 392 DLYMWISNIPNGPSAKFLVENIYTMGELKMTG 487
           D Y+W+SN+  GPS KFLV N++TM ELKM+G
Sbjct: 128 DTYLWMSNVEKGPSIKFLVHNVHTMKELKMSG 159



 Score = 88.2 bits (209), Expect = 7e-18
 Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 2/219 (0%)
 Frame = +3

Query: 144 PVRMSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMKILRN*CHIIRQSPKWREAKTCM 323
           P + + +   +   W NR+RVLV   RG + R R+LMK +++     +   K  + K+  
Sbjct: 45  PKQATEETRKRAELWTNRERVLVLCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLN 104

Query: 324 LLMKLAR*KTATNAFYLKE-ER*GIYICGYLIYPMDQVLNFWWKTFILWGN*K*LALFER 500
           +L ++A  K  T   Y +  +R   Y+    +     +         +            
Sbjct: 105 VLNEIAEMKNCTKVMYFESRKRKDTYLWMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRA 164

Query: 501 I*ALLSFDPQFTKDPHYCLLKELLVQIFGVPNYHPKSQPFFDHVYTLMV-LVTEFGFRNY 677
              +LSFD  F K P   L+K +L+Q  G P++HP+SQPF DHV+   V    +  FRN+
Sbjct: 165 SRPVLSFDDAFDKKPQLKLIKAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNF 224

Query: 678 QILSGRWVL*LK*GPRFVLNPVQIFSRIVGGCPIYGGNP 794
           QI+     L  + GPRFVL  V++F+    G  +Y  NP
Sbjct: 225 QIVDESLQL-QEVGPRFVLEMVRLFAGSFEGAVLY-DNP 261


>Z79757-7|CAF31478.1|  314|Caenorhabditis elegans Hypothetical
           protein F55B12.9 protein.
          Length = 314

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 614 TIFRSCVYPYGISNRIWVQKLSDSVW 691
           ++ + C++ + I N  W+ KLSD +W
Sbjct: 224 SVIQDCLHLFDIINATWIWKLSDELW 249


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +3

Query: 57  KAMVKVKKPSKVKQRITEPVTKDENVPL-----PPVRMSSDPAPKQVK 185
           KA VK + PS +K    +P  K E  P       PV  S DP+PK+ K
Sbjct: 729 KAPVKPRDPSPMKAVPIKPAPKTEVPPAVVKKPEPVAKSRDPSPKKAK 776


>U18384-1|AAA62504.1|  293|Caenorhabditis elegans collagen protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = +2

Query: 185 MDK-QTEGTRLCDERYQSSSQAFNEDIKKLMPHHKTESKMER--SKNLYVVN-EISEMKN 352
           +DK + + T+   ER +S  +    D+     H +    ++R  SK+L ++      +  
Sbjct: 194 LDKTELQETQEPQERPESQERTDPRDLAITAHHQELLQDIKRNFSKSLLLILVSYCIVLK 253

Query: 353 CNKCILFEGRKMRDLYMWI 409
           C KC++F+G  + D+Y +I
Sbjct: 254 CFKCLIFQGTSINDIYHFI 272


>Z68227-14|CAJ80809.1|  448|Caenorhabditis elegans Hypothetical
           protein F49C12.7b protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 731 IESCPDILQDRWWVPHLWGKSLNSIRSLAKP 823
           +  C   LQ++W + HL+ +S   IR L++P
Sbjct: 406 LSQCQTFLQNQWLLVHLFRRSKEFIRILSQP 436


>Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical
           protein F36G3.1 protein.
          Length = 964

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 66  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQRVLVFAMRGIN 233
           V +K P  +       +   E  P+   R  S P  KQV ++ + R+LV   R I+
Sbjct: 52  VTIKVPDTIAD--ANDLEPGERTPVSTPRAISPPIVKQVMYLQKPRILVMTQREIH 105


>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 275 PHHKTESKMERSKNLYVVNEISEMKNCNKCIL 370
           P H   ++M+RSK  +V+     +KNC++ +L
Sbjct: 153 PKHTPTNQMDRSKISFVIKPQINLKNCSRELL 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,155,067
Number of Sequences: 27780
Number of extensions: 543664
Number of successful extensions: 1428
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)