Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40050
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.92 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.92 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    25   0.92 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    25   1.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    25   1.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   1.2  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    25   1.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    25   1.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    25   1.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    25   1.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   8.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -2

Query: 456 MFSTKNLALGPLGILDIHIYKSLIFLPSNKMHLLQFFISLISLTTYKFLLLS 301
           +F T NL +  +GI  + +   + +LPS+    +   IS++   T  FLLL+
Sbjct: 241 LFYTVNLIIPCMGISFLTVL--VFYLPSDSGEKVSLSISILLSLTVFFLLLA 290


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -2

Query: 456 MFSTKNLALGPLGILDIHIYKSLIFLPSNKMHLLQFFISLISLTTYKFLLLS 301
           +F T NL +  +GI  + +   + +LPS+    +   IS++   T  FLLL+
Sbjct: 237 LFYTVNLIIPCVGISFLSVL--VFYLPSDSGEKVSLSISILLSLTVFFLLLA 286


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 774 PIYGGN-P*IPLGPWPNLRTGLIPR 845
           PIY GN P  P+GPW +++   IPR
Sbjct: 343 PIYYGNFPPRPMGPWISMQE-QIPR 366


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 774 PIYGGN-P*IPLGPWPNLRTGLIPR 845
           P+Y GN P  P+GPW +++   IPR
Sbjct: 132 PVYYGNFPPRPMGPWISMQE-QIPR 155


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 774 PIYGGN-P*IPLGPWPNLRTGLIPR 845
           P+Y GN P  P+GPW +++   IPR
Sbjct: 132 PVYYGNFPPRPMGPWISMQE-QIPR 155


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 774 PIYGGN-P*IPLGPWPNLRTGLIPR 845
           P+Y GN P  P+GPW +++   IPR
Sbjct: 132 PVYYGNFPPRPMGPWISMQE-QIPR 155


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 774 PIYGGN-P*IPLGPWPNLRTGLIPR 845
           P+Y GN P  P+GPW +++   IPR
Sbjct: 122 PVYYGNFPPRPMGPWISMQE-QIPR 145


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 774 PIYGGN-P*IPLGPWPNLRTGLIPR 845
           P+Y GN P  P+GPW +++   IPR
Sbjct: 127 PVYYGNFPPRPMGPWISMQE-QIPR 150


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 774 PIYGGN-P*IPLGPWPNLRTGLIPR 845
           P+Y GN P  P+GPW +++   IPR
Sbjct: 127 PVYYGNFPPRPMGPWISMQE-QIPR 150


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 774 PIYGGN-P*IPLGPWPNLRTGLIPR 845
           P+Y GN P  P+GPW +++   IPR
Sbjct: 127 PVYYGNFPPRPMGPWISMQE-QIPR 150


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 774 PIYGGN-P*IPLGPWPNLRTGLIPR 845
           P+Y GN P  P+GPW +++   IPR
Sbjct: 357 PVYYGNFPPRPMGPWISMQE-QIPR 380


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 597 YHPKSQPFFDHVYTLMVLVTEFGFRN 674
           YHP+  PF   +Y  ++ +    FR+
Sbjct: 347 YHPEDLPFIKDIYETVIKLEGASFRS 372


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 597 YHPKSQPFFDHVYTLMVLVTEFGFRN 674
           YHP+  PF   +Y  ++ +    FR+
Sbjct: 53  YHPEDLPFIKDIYETVIKLEGASFRS 78


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 874 GFQNWVPGLFLGISPVLRFGQ 812
           G  NWVPG    +  V RFG+
Sbjct: 338 GIPNWVPGNHDQLRLVSRFGE 358


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 874 GFQNWVPGLFLGISPVLRFGQ 812
           G  NWVPG    +  V RFG+
Sbjct: 338 GIPNWVPGNHDQLRLVSRFGE 358


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 487 ASHFQFPHSINVFHQKFSTWS 425
           A H + P++   FH K   W+
Sbjct: 788 AGHVRLPYTFEQFHNKELLWT 808


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 487 ASHFQFPHSINVFHQKFSTWS 425
           A H + P++   FH K   W+
Sbjct: 826 AGHVRLPYTFEQFHNKELLWT 846


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 404 WISNIPNGPSAKFLVEN 454
           W++N+PNG    ++  N
Sbjct: 336 WVANVPNGSVTNWVSGN 352


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 171 PKQVKWINRQR 203
           P+ +KW NR+R
Sbjct: 475 PRYIKWTNRER 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 268,910
Number of Sequences: 438
Number of extensions: 6503
Number of successful extensions: 24
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)