Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40048
         (248 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    43   0.001
UniRef50_Q8S5R8 Cluster: Putative retroelement; n=2; Oryza sativ...    33   1.6  
UniRef50_UPI000155E916 Cluster: PREDICTED: hypothetical protein;...    32   2.8  
UniRef50_Q8D6L6 Cluster: Sugar phosphate permease; n=17; Gammapr...    31   3.7  
UniRef50_Q6ZL56 Cluster: Putative uncharacterized protein OJ1506...    30   8.5  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 18/20 (90%), Positives = 18/20 (90%)
 Frame = -2

Query: 247 LLRWVDELRAHLV*SGYWSP 188
           LLRWVDEL AHLV SGYWSP
Sbjct: 156 LLRWVDELTAHLVLSGYWSP 175



 Score = 31.1 bits (67), Expect = 4.9
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -1

Query: 191 PIDIHDVNAPPTLRYKF 141
           P  ++DVNAPPT RYKF
Sbjct: 175 PRHLYDVNAPPTSRYKF 191


>UniRef50_Q8S5R8 Cluster: Putative retroelement; n=2; Oryza
           sativa|Rep: Putative retroelement - Oryza sativa (Rice)
          Length = 504

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -3

Query: 78  HGRNRRGWWYPPAR 37
           HGR RR WWY PAR
Sbjct: 331 HGRRRRQWWYSPAR 344


>UniRef50_UPI000155E916 Cluster: PREDICTED: hypothetical protein;
           n=1; Equus caballus|Rep: PREDICTED: hypothetical protein
           - Equus caballus
          Length = 179

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 222 EPTWCEVVTGAHRHPRRKCATH 157
           EP WC V+TG  R P   C TH
Sbjct: 64  EPDWCPVLTGVLRAPEITCFTH 85


>UniRef50_Q8D6L6 Cluster: Sugar phosphate permease; n=17;
           Gammaproteobacteria|Rep: Sugar phosphate permease -
           Vibrio vulnificus
          Length = 446

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 98  FEGWG-SRCNYN*DLRTYISRWVAHLRRGCLWAPVTTSHQVGSELV 232
           F+GWG   C+        ++ W +   RG LWA   T+H VG  L+
Sbjct: 131 FQGWGWPSCS------KLLTTWYSRSERGFLWAIWNTAHNVGGALI 170


>UniRef50_Q6ZL56 Cluster: Putative uncharacterized protein
          OJ1506_G02.10; n=1; Oryza sativa (japonica
          cultivar-group)|Rep: Putative uncharacterized protein
          OJ1506_G02.10 - Oryza sativa subsp. japonica (Rice)
          Length = 229

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 78 HGRNRRGWWYPPAR 37
          HGR R+ WWY PAR
Sbjct: 6  HGRQRQLWWYSPAR 19


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 298,020,706
Number of Sequences: 1657284
Number of extensions: 5183491
Number of successful extensions: 13572
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13570
length of database: 575,637,011
effective HSP length: 61
effective length of database: 474,542,687
effective search space used: 9965396427
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)