Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40048
         (248 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22302| Best HMM Match : Trefoil (HMM E-Value=0.00016)               30   0.33 
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             29   0.76 
SB_41163| Best HMM Match : Peptidase_M48 (HMM E-Value=0.00095)         27   1.8  
SB_32979| Best HMM Match : Peptidase_M48 (HMM E-Value=3.8)             27   1.8  
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   27   2.3  
SB_45502| Best HMM Match : Keratin_B2 (HMM E-Value=5.6)                26   5.4  
SB_55609| Best HMM Match : ig (HMM E-Value=0.022)                      25   9.4  
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)                 25   9.4  

>SB_22302| Best HMM Match : Trefoil (HMM E-Value=0.00016)
          Length = 137

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 173 VNAPPTLRYKF*GLNYSYNGCPTLQTETHYCFTAEIGGXGGTH 45
           VNAP  + Y F  LNY Y+    + T+T Y  T +  G  G +
Sbjct: 73  VNAPLDIPYCFYPLNYGYSLTSKVATKTGYKLTLQRQGQDGPY 115


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 51  TTXPAYFCREAVMRFSLKGGAAVVTIIETLELISQGGWRIYVVDVY 188
           T  P+Y     +  +   GG   +T I TLE+I +   R +V D Y
Sbjct: 106 TQVPSYLLGHPIEDYDASGGTVYITAIYTLEMICKIISRGFVKDSY 151


>SB_41163| Best HMM Match : Peptidase_M48 (HMM E-Value=0.00095)
          Length = 225

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 239 MGGRAQSPPGVKWLLEPIDIHDVNA 165
           M  R++   G+KW +  +D  DVNA
Sbjct: 105 MANRSEEIDGIKWQVNVVDTDDVNA 129


>SB_32979| Best HMM Match : Peptidase_M48 (HMM E-Value=3.8)
          Length = 65

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 239 MGGRAQSPPGVKWLLEPIDIHDVNA 165
           M  R++   G+KW +  +D  DVNA
Sbjct: 1   MANRSEEIDGIKWQVNVVDTDDVNA 25


>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 30  VESARVGTTXPAYFCREAVMRFSLKGGAAVVTI-IETLELISQGGWRIYVV 179
           V S +V  T P YFC +++ RF L      V + + ++ ++S G    +V+
Sbjct: 613 VTSVQVLCTAPCYFCSDSLYRFVLLLFRLSVQVRVTSVRIVSTGSLYSFVL 663


>SB_45502| Best HMM Match : Keratin_B2 (HMM E-Value=5.6)
          Length = 137

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 110 PTLQTETHYCFTAEIGGXGGTHP 42
           PT  T  +YC T+  G   G HP
Sbjct: 47  PTSCTRANYCRTSATGWLNGAHP 69


>SB_55609| Best HMM Match : ig (HMM E-Value=0.022)
          Length = 200

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 210 CEVVTGAHRHPRRKCATHLEI 148
           C+VV+G    PR +C+ HL++
Sbjct: 157 CDVVSG---RPRERCSVHLQV 174


>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 236 GGRAQSPPGVKWLLEPIDIHD 174
           GG+AQ+P G +W  +P   H+
Sbjct: 392 GGQAQAPSGSEWAEQPNGDHN 412


>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
          Length = 1383

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 137 LRTYISRWVAHLRRGCLWAPVTTSHQVGSEL 229
           L+  ++RWV  LRR C   PVT    +G+ +
Sbjct: 154 LKDVVNRWVPELRRFC---PVTPFLLIGTHI 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,177,983
Number of Sequences: 59808
Number of extensions: 163826
Number of successful extensions: 351
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 16,821,457
effective HSP length: 60
effective length of database: 13,232,977
effective search space used: 291125494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)