Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40048
         (248 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   1.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   2.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   3.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   3.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   5.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   5.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           19   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    19   7.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    19   9.3  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
          protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -3

Query: 75 GRNRRGWW 52
          G+N +GWW
Sbjct: 18 GQNNKGWW 25


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 29  CGVRAGGYH 55
           CG RA GYH
Sbjct: 190 CGDRASGYH 198


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 52  PPXPPISAVKQ*CV 93
           PP PP+  V   CV
Sbjct: 180 PPEPPVPTVTSACV 193


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 93  NALLLHGRNRRGWWYPP 43
           NA+LL GR+++    PP
Sbjct: 369 NAMLLSGRSQKSTTGPP 385


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = -3

Query: 234 WTSSEPTWCEVVTGAHRHPRRKC 166
           W+ ++  +C+ +T  +R    KC
Sbjct: 109 WSYNDVKYCDGLTSVYRMQVDKC 131


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 4/8 (50%), Positives = 7/8 (87%)
 Frame = +1

Query: 28  LWSPRGWV 51
           +W+P GW+
Sbjct: 177 IWTPHGWM 184


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 197 LEPIDIHD 174
           L P+DIHD
Sbjct: 380 LSPVDIHD 387


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 170 NAPPTLRYKF 141
           NAPP L Y F
Sbjct: 419 NAPPMLLYSF 428


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 170 NAPPTLRYKF 141
           NAPP L Y F
Sbjct: 419 NAPPMLLYSF 428


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 163 GAFTSWMSMGSSNH 204
           G+ T+W+S    NH
Sbjct: 343 GSVTNWVSGNHDNH 356


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 3   RYLQVVGPLVESAR 44
           RYL V  PL+ S R
Sbjct: 136 RYLAVTQPLIYSRR 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,527
Number of Sequences: 438
Number of extensions: 1418
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)